CoP: Co-expressed Biological Processes

Gene omics information

Query gene ID Ptp.100.1.S1_a_at

Gene name

Organism Populus trichocarpa

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF %ile Gene/Probe ID Repr.ID Gene Name Functional Description Ev AGI code Arabidopsis gene name S.X. H.G. Other DB
0.91 99.2 Ptp.100.1.S1_a_at BU834161 - - 4e-5 At2g41790 peptidase M16 family protein / insulinase family protein S.X. H.G.
0.83 97.0 Ptp.100.2.S1_at CK088962 hypothetical protein - 1e+0 At3g56770 basic helix-loop-helix (bHLH) family protein S.X. H.G.
0.67 91.1 Ptp.4937.1.S1_at DN492651 - - 6e-1 At1g79970 - S.X. H.G.
0.61 87.0 Ptp.2543.1.S1_at CK092566 hypothetical protein - 7e+0 At3g59390 unknown protein S.X. H.G.
0.50 78.6 PtpAffx.123671.1.A1_at CV261233 endoplasmic reticulum [ER]-type calcium ATPase /// endoplasmic reticulum [ER]-type calcium ATPase - 6e-2 At1g07810 ECA1 (ER-TYPE CA2+-ATPASE 1) S.X. H.G.
0.46 73.7 Ptp.3383.1.S1_at DN488137 hypothetical protein - 2e-25 At2g21270 ubiquitin fusion degradation UFD1 family protein S.X. H.G.
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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX %ile GSM ID Assay Name GSE ID Experiment Title
7.7 98.3 GSM328284 Populus x canescens root control_rep_03 GSE13109 Effect of hypoxia on gene expression in Grey poplar
7.7 98.3 GSM328281 Populus x canescens root control_rep_02 GSE13109 Effect of hypoxia on gene expression in Grey poplar
5.8 97.4 GSM328292 Populus x canescens root control_rep_05 GSE13109 Effect of hypoxia on gene expression in Grey poplar
5.0 96.6 GSM328559 Populus x canescens root control_rep_10 GSE13109 Effect of hypoxia on gene expression in Grey poplar
4.8 96.4 GSM328561 Populus x canescens root control_rep_12 GSE13109 Effect of hypoxia on gene expression in Grey poplar
4.4 95.9 GSM328277 Populus x canescens root control_rep_01 GSE13109 Effect of hypoxia on gene expression in Grey poplar
4.4 95.9 GSM328558 Populus x canescens root control_rep_09 GSE13109 Effect of hypoxia on gene expression in Grey poplar
4.2 95.6 GSM328285 Populus x canescens root control_rep_04 GSE13109 Effect of hypoxia on gene expression in Grey poplar
4.1 95.5 GSM328563 Populus x canescens root hypoxia_rep_05 GSE13109 Effect of hypoxia on gene expression in Grey poplar
4.0 95.3 GSM328566 Populus x canescens root hypoxia_rep_08 GSE13109 Effect of hypoxia on gene expression in Grey poplar
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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF Ev BS Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.47 0 811 PtpAffx.30760.1.A1_at CV269975 hypothetical protein - 3e-1 At2g22520 unknown protein C.G. S.X.
0.47 0 811 PtpAffx.30760.1.A1_s_at CV269975 hypothetical protein - 3e-1 At2g22520 unknown protein C.G. S.X.
0.51 0 735 Ptp.100.2.S1_a_at CK088962 hypothetical protein - 1e+0 At3g56770 basic helix-loop-helix (bHLH) family protein C.G. S.X.
0.51 0 735 Ptp.100.2.S1_at CK088962 hypothetical protein - 1e+0 At3g56770 basic helix-loop-helix (bHLH) family protein C.G. S.X.
0.01 2e-1 38 PtpAffx.205837.1.S1_at pmrna11554 plant synaptotagmin - 1e-40 At2g20990 SYTA (SYNAPTOTAGMIN A) C.G. S.X.
0.02 2e-1 38 PtpAffx.12764.1.A1_s_at CV257777 hypothetical protein - 5e-7 At2g28060 protein kinase-related C.G. S.X.
0.01 9e-1 36 PtpAffx.308.1.A1_a_at CV280476 hypothetical protein - 5e-74 At1g12900 GAPA-2 (GLYCERALDEHYDE 3-PHOSPHATE DEHYDROGENASE A SUBUNIT 2) C.G. S.X.
0.01 9e-1 36 PtpAffx.308.1.A2_at CV242048 hypothetical protein - 5e-74 At1g12900 GAPA-2 (GLYCERALDEHYDE 3-PHOSPHATE DEHYDROGENASE A SUBUNIT 2) C.G. S.X.
0.02 9e-1 36 PtpAffx.208356.1.S1_at pmrna16613 hypothetical protein - 7e-8 At5g18970 AWPM-19-like membrane family protein C.G. S.X.
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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF Ev BS Species Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.08 4e-5 50 Arabidopsis thaliana At2g41790 818778 peptidase M16 family protein / insulinase family protein F:metalloendopeptidase activity, zinc ion binding, catalytic activity, metal ion binding;P:proteolysis;C:cellular_component unknown;BOMFPAV - - - C.G. S.X.
0.35 5e-24 113 Glycine max GmaAffx.92978.1.S1_s_at CF808703 - - 5e-9 At2g41790 peptidase M16 family protein / insulinase family protein C.G. S.X.
0.07 3e-4 46 Hordeum vulgare Contig4628_at Contig4628 - - 3e-8 At2g41790 peptidase M16 family protein / insulinase family protein C.G. S.X.
0.10 2e-15 85 Oryza sativa Os07g0570500 CB663734 - Peptidase M16, C-terminal domain containingprotein 7e-10 Atcg00280 - C.G. S.X.
0.04 7e-4 46 Triticum aestivum Ta.28655.1.S1_at CK208696 - - 4e-4 At3g57470 peptidase M16 family protein / insulinase family protein C.G. S.X.
0.55 2e-81 301 Vitis vinifera 1618047_at CF207570 hypothetical protein LOC100241851 - 1e-5 At2g41790 peptidase M16 family protein / insulinase family protein C.G. S.X.
0.02 4e+0 32 Zea mays Zm.16840.2.A1_a_at BM078188 hypothetical protein LOC100191351 - 5e-9 At5g27710 unknown protein C.G. S.X.
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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC GO ID Process Name
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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID Link to Kappa-View Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID Link to KEGG PATHWAY Pathway Name
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