CoP: Co-expressed Biological Processes

Gene omics information

Query gene ID PsAffx.psMA013xP16f_at

Gene name

Organism Glycine max

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF %ile Gene/Probe ID Repr.ID Gene Name Functional Description Ev AGI code Arabidopsis gene name S.X. H.G. Other DB
0.91 98.6 PsAffx.psMA013xP16f_at PsAffx.psMA013xP16f - - 3e-1 At2g30560 glycine-rich protein S.X. H.G.
0.83 92.5 PsAffx.CL1586Contig1_at PsAffx.CL1586Contig1 - - 6e+0 At4g03950 glucose-6-phosphate/phosphate translocator, putative S.X. H.G.
0.83 92.5 PsAffx.C61000020_at PsAffx.C61000020 - - 9e-1 At5g19030 RNA recognition motif (RRM)-containing protein S.X. H.G.
0.80 91.5 PsAffx.C417000001_at PsAffx.C417000001 - - 3e-1 At1g55130 endomembrane protein 70, putative S.X. H.G.
0.80 91.5 PsAffx.C338000008_at PsAffx.C338000008 - - 3e+0 At5g58540 protein kinase family protein S.X. H.G.
0.71 87.8 PsAffx.C22000090_at PsAffx.C22000090 - - 3e-2 At5g55690 MADS-box protein (AGL47) S.X. H.G.
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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX %ile GSM ID Assay Name GSE ID Experiment Title
18.6 99.7 GSM171675 28_W.I.M.5, Experimental replicate W GSE7124 Plant and pathogen gene expression during infection by P.sojae of 8 soybean cultivars varying in quantitative resistance
18.1 99.7 GSM292448 49_C110.1G.V7G1P, Experimental replicate 1 GSE11611 Combined gene expression and QTL analysis of soybean quantitative resistance to Phytophthora sojae
15.6 99.6 GSM294303 54_3153.2I.R9I2L, Experimental replicate 2 GSE11611 Combined gene expression and QTL analysis of soybean quantitative resistance to Phytophthora sojae
13.7 99.5 GSM171619 15_W.F.M.5, Experimental replicate W GSE7124 Plant and pathogen gene expression during infection by P.sojae of 8 soybean cultivars varying in quantitative resistance
12.7 99.5 GSM171611 13_W.E.M.5, Experimental replicate W GSE7124 Plant and pathogen gene expression during infection by P.sojae of 8 soybean cultivars varying in quantitative resistance
12.7 99.5 GSM293226 15_C065.1P.R9P2L, Experimental replicate 1 GSE11611 Combined gene expression and QTL analysis of soybean quantitative resistance to Phytophthora sojae
11.5 99.4 GSM293248 35_1155.1P.R097L, Experimental replicate 1 GSE11611 Combined gene expression and QTL analysis of soybean quantitative resistance to Phytophthora sojae
11.2 99.4 GSM293071 71_1055.1N.R032L, Experimental replicate 1 GSE11611 Combined gene expression and QTL analysis of soybean quantitative resistance to Phytophthora sojae
10.9 99.4 GSM292384 59_C093.1F.R9F1L, Experimental replicate 1 GSE11611 Combined gene expression and QTL analysis of soybean quantitative resistance to Phytophthora sojae
10.5 99.3 GSM294268 23_2428.2I.R297P, Experimental replicate 2 GSE11611 Combined gene expression and QTL analysis of soybean quantitative resistance to Phytophthora sojae
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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF Ev BS Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.28 2e-141 502 PsAffx.C7000090_at PsAffx.C7000090 - - 2e+0 At5g07600 oleosin / glycine-rich protein C.G. S.X.
0.13 2e-98 359 PsAffx.C276000008_at PsAffx.C276000008 - - 1e+0 At2g06520 PSBX (photosystem II subunit X) C.G. S.X.
0.02 7e-3 42 PsAffx.C84000034_at PsAffx.C84000034 - - 2e-1 At5g49400 zinc knuckle (CCHC-type) family protein C.G. S.X.
0.02 3e-2 40 PsAffx.C3000175_at PsAffx.C3000175 - - 3e-1 At2g44790 UCC2 (UCLACYANIN 2) C.G. S.X.
0.03 3e-2 40 PsAffx.C161000002_at PsAffx.C161000002 - - 2e+0 At5g22520 unknown protein C.G. S.X.
0.02 1e-1 38 PsAffx.CL75Contig1_at PsAffx.CL75Contig1 - - 3e+0 At4g26530 fructose-bisphosphate aldolase, putative C.G. S.X.
0.01 1e-1 38 PsAffx.C41000007_at PsAffx.C41000007 - - 4e-1 At2g35765 unknown protein C.G. S.X.
0.04 1e-1 38 HgAffx.9573.1.S1_at CB378928 - - 3e-1 At4g14147 ARPC4 C.G. S.X.
0.03 1e-1 38 GmaAffx.62758.1.S1_s_at BE583512 - - 4e+0 At5g42190 ASK2 (ARABIDOPSIS SKP1-LIKE 2) C.G. S.X.
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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF Ev BS Species Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.04 3e-1 36 Arabidopsis thaliana At2g30560 817605 glycine-rich protein F:unknown;P:biological_process unknown;C:cellular_component unknown;MBOPFVA - - - C.G. S.X.
0.09 6e-10 63 Hordeum vulgare Contig11015_at Contig11015 - - 1e-29 At4g14147 ARPC4 C.G. S.X.
0.03 1e-5 52 Oryza sativa Os03g0848300 AK102089.1 - ARP2/3 complex 20 kDa subunit (p20-ARC)(Actin-related protein 2/3 complex subunit 4) 3e-27 At4g14147 ARPC4 C.G. S.X.
0.05 4e-1 36 Populus trichocarpa PtpAffx.81779.1.A1_at CV273589 - - 4e-1 At4g03320 tic20-IV (TRANSLOCON AT THE INNER ENVELOPE MEMBRANE OF CHLOROPLASTS 20-IV) C.G. S.X.
0.10 3e-7 56 Triticum aestivum TaAffx.24632.1.S1_at CA736152 - - 1e-29 At4g14147 ARPC4 C.G. S.X.
0.03 6e+0 30 Vitis vinifera 1621951_at BQ795175 hypothetical protein LOC100252259 - 3e-1 At5g38050 unknown protein C.G. S.X.
0.04 2e-3 42 Zea mays Zm.12074.1.A1_at BM417762 actin-related protein 2/3 complex subunit 4 - 5e-13 At4g14147 ARPC4 C.G. S.X.
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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC GO ID Process Name
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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID Link to Kappa-View Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID Link to KEGG PATHWAY Pathway Name
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