Gene omics information

Query gene ID	PsAffx.psMA002xO11f_s_at
Gene name
Organism	Glycine max

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF	%ile	Gene/Probe ID	Repr.ID	Gene Name	Functional Description	Ev	AGI code	Arabidopsis gene name	S.X.	H.G.	Other DB
0.91	98.6	PsAffx.psMA002xO11f_s_at	PsAffx.psMA002xO11f	-	-	5e+0	At5g10430	AGP4 (ARABINOGALACTAN PROTEIN 4)	S.X.	H.G.	Please select
0.50	71.7	PsAffx.C1000091_at	PsAffx.C1000091	-	-	4e-1	At2g21490	LEA (DEHYDRIN LEA)	S.X.	H.G.	Please select
0.33	46.1	PsAffx.psZG005xN22f_s_at	PsAffx.psZG005xN22f	-	-	9e+0	At5g14602	unknown protein	S.X.	H.G.	Please select
0.21	26.6	PsAffx.psMC003xD22f_s_at	PsAffx.psMC003xD22f	-	-	3e+0	At5g22080	DNAJ heat shock N-terminal domain-containing protein	S.X.	H.G.	Please select
0.13	16.3	HgAffx.17965.1.S1_at	CB278425	-	-	2e+0	At2g23340	AP2 domain-containing transcription factor, putative	S.X.	H.G.	Please select
0.01	3.4	GmaAffx.83815.1.S1_s_at	BG404904	-	-	1e+0	At1g04330	unknown protein	S.X.	H.G.	Please select

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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.

Std2 GX	%ile	GSM ID	Assay Name	GSE ID	Experiment Title
43.2	99.9	GSM292923	95_1465.1L.R283L, Experimental replicate 1	GSE11611	Combined gene expression and QTL analysis of soybean quantitative resistance to Phytophthora sojae
22.5	99.8	GSM293082	81_C019.1N.R9N1U, Experimental replicate 1	GSE11611	Combined gene expression and QTL analysis of soybean quantitative resistance to Phytophthora sojae
17.0	99.7	GSM171680	29_Y.F.M.5, Experimental replicate Y	GSE7124	Plant and pathogen gene expression during infection by P.sojae of 8 soybean cultivars varying in quantitative resistance
14.9	99.6	GSM171611	13_W.E.M.5, Experimental replicate W	GSE7124	Plant and pathogen gene expression during infection by P.sojae of 8 soybean cultivars varying in quantitative resistance
13.9	99.6	GSM171660	24_Y.I.M.5, Experimental replicate Y	GSE7124	Plant and pathogen gene expression during infection by P.sojae of 8 soybean cultivars varying in quantitative resistance
13.2	99.5	GSM294268	23_2428.2I.R297P, Experimental replicate 2	GSE11611	Combined gene expression and QTL analysis of soybean quantitative resistance to Phytophthora sojae
12.9	99.5	GSM171675	28_W.I.M.5, Experimental replicate W	GSE7124	Plant and pathogen gene expression during infection by P.sojae of 8 soybean cultivars varying in quantitative resistance
12.8	99.5	GSM171693	31_Z.I.M.5, Experimental replicate Z	GSE7124	Plant and pathogen gene expression during infection by P.sojae of 8 soybean cultivars varying in quantitative resistance
12.4	99.5	GSM292229	25_C029.1B.R9B2L, Experimental replicate 1	GSE11611	Combined gene expression and QTL analysis of soybean quantitative resistance to Phytophthora sojae
10.2	99.3	GSM171619	15_W.F.M.5, Experimental replicate W	GSE7124	Plant and pathogen gene expression during infection by P.sojae of 8 soybean cultivars varying in quantitative resistance

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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF	Ev	BS	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.47	1e-174	613	PsAffx.C4000063_at	PsAffx.C4000063	-	-	7e-1	At3g60770	40S ribosomal protein S13 (RPS13A)	C.G.	S.X.	Please select
0.24	4e-29	129	PsAffx.C4000057_s_at	PsAffx.C4000057	-	-	3e+0	At5g56020	-	C.G.	S.X.	Please select
0.02	3e-2	40	PsAffx.C54000006_at	PsAffx.C54000006	-	-	9e-1	At3g44950	glycine-rich protein	C.G.	S.X.	Please select
0.01	3e-2	40	PsAffx.C11000020_at	PsAffx.C11000020	-	-	2e+0	At3g44950	glycine-rich protein	C.G.	S.X.	Please select
0.03	1e-1	38	PsAffx.psMY005iB10r_at	PsAffx.psMY005iB10r	-	-	3e-1	At3g21865	PEX22 (peroxin 22)	C.G.	S.X.	Please select
0.02	1e-1	38	PsAffx.CL2581Contig1_at	PsAffx.CL2581Contig1	-	-	7e+0	At5g47570	unknown protein	C.G.	S.X.	Please select
0.03	1e-1	38	PsAffx.C58000078_at	PsAffx.C58000078	-	-	3e-2	At1g65720	unknown protein	C.G.	S.X.	Please select
0.02	1e-1	38	PsAffx.C112000023_at	PsAffx.C112000023	-	-	1e+0	At2g10965	unknown protein	C.G.	S.X.	Please select
0.04	4e-1	36	PsAffx.psMA016xI02f_s_at	PsAffx.psMA016xI02f	-	-	1e+1	At4g18610	LSH9 (LIGHT SENSITIVE HYPOCOTYLS 9)	C.G.	S.X.	Please select

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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF	Ev	BS	Species	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.03	5e+0	32	Arabidopsis thaliana	At5g10430	830907	AGP4 (ARABINOGALACTAN PROTEIN 4)	Encodes arabinogalactan-protein (AGP4).	-	-	-	C.G.	S.X.	Please selectath TAIR (integral)ath,osa KEGG (integral)ath PlantTribes (integral)ath,osa Gramene (integral)ath MPSS (genome)ath InParanoid (ortholog)ath Plant RBP (ortholog)ath SIGnAL (T-DNA)ath RAFL (full-length clone)ath AtGDB (genome)ath Genevestigator (expression)ath,ptr eFP Browser (expression)ath AVT (expression)ath ATTED-II (co-expression)ath AtcisDB (cis-element)ath SUBA (hydropathy)ath AtProteomeath Plant Proteome Databaseath PMN (pathway)ath,osa KaPPA-View 4 (pathway)ath RnR (over-expression)ath iHOP (report)
0.03	6e-1	34	Hordeum vulgare	EBro08_SQ007_B12_s_at	EBro08_SQ007_B12	-	-	3e+0	At2g48140	EDA4 (embryo sac development arrest 4)	C.G.	S.X.	Please select
0.04	6e-1	36	Oryza sativa	Os07g0278733	9640.m01009	-	-	2e-1	At5g47210	nuclear RNA-binding protein, putative	C.G.	S.X.	Please selectath,osa KEGG (integral)ath,osa Gramene (integral)ath,osa KaPPA-View 4 (pathway)
0.03	2e+0	34	Populus trichocarpa	PtpAffx.217022.1.S1_at	pmrna32125	hypothetical protein	-	2e+0	At1g15950	CCR1 (CINNAMOYL COA REDUCTASE 1)	C.G.	S.X.	Please selectath,ptr eFP Browser (expression)
0.04	3e-1	36	Triticum aestivum	TaAffx.53090.1.S1_at	CA696758	-	-	7e-1	At4g24026	unknown protein	C.G.	S.X.	Please select
0.03	6e+0	30	Vitis vinifera	1621018_at	CF517523	hypothetical protein LOC100243781	-	4e+0	At4g21030	Dof-type zinc finger domain-containing protein	C.G.	S.X.	Please select
0.03	2e+0	32	Zea mays	Zm.8157.1.A1_at	BM073110	-	-	1e+0	At5g16870	aminoacyl-tRNA hydrolase	C.G.	S.X.	Please select

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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC	GO ID	Process Name

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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID	Link to Kappa-View	Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID	Link to KEGG PATHWAY	Pathway Name

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