Gene omics information

Query gene ID	PsAffx.psHB012xF21f_s_at
Gene name
Organism	Glycine max

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF	%ile	Gene/Probe ID	Repr.ID	Gene Name	Functional Description	Ev	AGI code	Arabidopsis gene name	S.X.	H.G.	Other DB
0.82	91.9	PsAffx.psHB012xF21f_s_at	PsAffx.psHB012xF21f	-	-	9e-25	At2g19520	FVE	S.X.	H.G.	Please select
0.46	65.5	GmaAffx.56431.1.S1_x_at	BU761499	-	-	1e-9	At1g27650	ATU2AF35A	S.X.	H.G.	Please select
0.46	65.5	GmaAffx.55872.1.S1_at	CA800829	-	-	8e-1	At2g41120	unknown protein	S.X.	H.G.	Please select
0.44	63.3	GmaAffx.86434.1.S1_s_at	BG651980	-	-	3e-25	At3g13570	SCL30a	S.X.	H.G.	Please select
0.43	60.6	GmaAffx.39028.1.S1_at	BF598446	-	-	4e-8	At4g26000	PEP (PEPPER)	S.X.	H.G.	Please select
0.43	60.6	GmaAffx.46100.1.S1_at	BM086686	-	-	8e-9	At3g02680	NBS1 (NIJMEGEN BREAKAGE SYNDROME 1)	S.X.	H.G.	Please select
0.42	59.3	GmaAffx.448.1.S1_at	AW568523	-	-	2e-73	At3g44600	CYP71 (CYCLOPHILIN71)	S.X.	H.G.	Please select
0.42	59.3	GmaAffx.83790.1.S1_at	BE555651	-	-	6e-25	At1g16190	DNA repair protein RAD23, putative	S.X.	H.G.	Please select
0.41	58.1	GmaAffx.46716.1.S1_at	BM178782	-	-	2e-11	At3g03740	ATBPM4 (BTB-POZ and MATH domain 4)	S.X.	H.G.	Please select
0.40	57.1	GmaAffx.56431.1.S1_at	BU761499	-	-	1e-9	At1g27650	ATU2AF35A	S.X.	H.G.	Please select

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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.

Std2 GX	%ile	GSM ID	Assay Name	GSE ID	Experiment Title
13.0	99.5	GSM258499	Soybean shoot apical meristem, 4 short-day treatment	GSE10251	Gene expression profiling implicates novel hormonal regulation of the floral initiation process in soybeans
11.4	99.4	GSM258501	Soybean shoot apical meristem, 1 short-day treatment replicate B	GSE10251	Gene expression profiling implicates novel hormonal regulation of the floral initiation process in soybeans
9.2	99.2	GSM258498	Soybean shoot apical meristem, 2 short-day treatment	GSE10251	Gene expression profiling implicates novel hormonal regulation of the floral initiation process in soybeans
8.2	99.0	GSM258496	Vegetative soybean shoot apical meristem	GSE10251	Gene expression profiling implicates novel hormonal regulation of the floral initiation process in soybeans
6.5	98.7	GSM258500	Soybean shoot apical meristem, 6 short-day treatment	GSE10251	Gene expression profiling implicates novel hormonal regulation of the floral initiation process in soybeans
6.4	98.6	GSM258504	Soybean shoot apical meristem, 4 short-day replicate B	GSE10251	Gene expression profiling implicates novel hormonal regulation of the floral initiation process in soybeans
6.1	98.5	GSM309530	storage protein suppression expt, RNAi biol rep2, tech rep1	GSE12314	Storage Protein Suppression in Transgenic Soybean Cotyledons
6.1	98.5	GSM309531	storage protein suppression expt, RNAi biol rep2, tech rep2	GSE12314	Storage Protein Suppression in Transgenic Soybean Cotyledons
5.6	98.3	GSM309557	storage protein suppression expt, RNAi biol rep1, tech rep2	GSE12314	Storage Protein Suppression in Transgenic Soybean Cotyledons
4.7	97.8	GSM309529	storage protein suppression expt, RNAi biol rep1, tech rep1	GSE12314	Storage Protein Suppression in Transgenic Soybean Cotyledons

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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF	Ev	BS	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.34	2e-78	291	Gma.6102.3.S1_s_at	BM309191	-	-	1e-90	At2g19520	FVE	C.G.	S.X.	Please select
0.04	4e-12	71	GmaAffx.1301.15.S1_at	AW757159	-	-	3e-9	At2g01021	unknown protein	C.G.	S.X.	Please select
0.06	3e-7	56	PsAffx.psHB005xL12f_at	PsAffx.psHB005xL12f	-	-	9e-8	At2g01021	unknown protein	C.G.	S.X.	Please select
0.04	4e-3	42	PsAffx.CL63Contig1_at	PsAffx.CL63Contig1	-	-	1e+0	At5g10620	-	C.G.	S.X.	Please select
0.04	6e-2	38	PsAffx.psMA002xJ01f_at	PsAffx.psMA002xJ01f	-	-	6e+0	At4g12510	protease inhibitor/seed storage/lipid transfer protein (LTP) family protein	C.G.	S.X.	Please select
0.05	6e-2	38	PsAffx.psHB012xE14f_s_at	PsAffx.psHB012xE14f	-	-	4e+0	At3g15210	ERF4 (ETHYLENE RESPONSIVE ELEMENT BINDING FACTOR 4)	C.G.	S.X.	Please select
0.05	6e-2	38	PsAffx.psHB012xE14f_at	PsAffx.psHB012xE14f	-	-	4e+0	At3g15210	ERF4 (ETHYLENE RESPONSIVE ELEMENT BINDING FACTOR 4)	C.G.	S.X.	Please select
0.03	6e-2	38	PsAffx.CL168Contig1_at	PsAffx.CL168Contig1	-	-	2e+0	At2g35850	unknown protein	C.G.	S.X.	Please select
0.04	6e-2	38	GmaAffx.90116.1.S1_at	CF805841	-	-	4e+0	At4g18270	ATTRANS11	C.G.	S.X.	Please select

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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF	Ev	BS	Species	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.12	9e-25	113	Arabidopsis thaliana	At2g19520	816471	FVE	Controls flowering.	-	-	-	C.G.	S.X.	Please selectath TAIR (integral)ath,osa KEGG (integral)ath PlantTribes (integral)ath,osa Gramene (integral)ath MPSS (genome)ath InParanoid (ortholog)ath Plant RBP (ortholog)ath SIGnAL (T-DNA)ath RAFL (full-length clone)ath AtGDB (genome)ath Genevestigator (expression)ath,ptr eFP Browser (expression)ath AVT (expression)ath ATTED-II (co-expression)ath AtcisDB (cis-element)ath SUBA (hydropathy)ath AtProteomeath Plant Proteome Databaseath PMN (pathway)ath,osa KaPPA-View 4 (pathway)ath RnR (over-expression)ath iHOP (report)
0.13	3e-20	97	Hordeum vulgare	Contig5854_s_at	Contig5854	-	-	3e-87	At2g19520	FVE	C.G.	S.X.	Please select
0.13	4e-22	105	Oryza sativa	Os01g0710000	AK111794.1	-	-	8e-63	At2g19520	FVE	C.G.	S.X.	Please selectath,osa KEGG (integral)ath,osa Gramene (integral)ath,osa KaPPA-View 4 (pathway)
0.27	9e-32	137	Populus trichocarpa	PtpAffx.19327.2.S1_s_at	BU823524	nucleosome/chromatin assembly factor group	-	4e-99	At2g19520	FVE	C.G.	S.X.	Please selectath,ptr eFP Browser (expression)
0.22	8e-16	83	Triticum aestivum	Ta.3385.1.A1_at	CD898938	-	-	2e-102	At2g19520	FVE	C.G.	S.X.	Please select
0.05	3e-3	40	Vitis vinifera	1613699_s_at	CB977638	-	-	5e+0	At4g30670	unknown protein	C.G.	S.X.	Please select
0.12	1e-21	101	Zea mays	Zm.512.1.A1_at	AF384037.1	nucleosome/chromatin assembly factor C	-	9e-69	At2g19520	FVE	C.G.	S.X.	Please select

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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC	GO ID	Process Name

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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID	Link to Kappa-View	Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID	Link to KEGG PATHWAY	Pathway Name

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