CoP: Co-expressed Biological Processes

Gene omics information

Query gene ID PsAffx.psHB004xH08f_at

Gene name

Organism Glycine max

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF %ile Gene/Probe ID Repr.ID Gene Name Functional Description Ev AGI code Arabidopsis gene name S.X. H.G. Other DB
0.83 92.5 PsAffx.psHB004xH08f_at PsAffx.psHB004xH08f - - 5e+0 At3g61840 unknown protein S.X. H.G.
0.71 87.8 GmaAffx.14280.1.S1_at BM095066 - - 1e-8 At1g22710 SUC2 (SUCROSE-PROTON SYMPORTER 2) S.X. H.G.
0.71 87.8 GmaAffx.14602.1.S1_at BM731566 - - 2e-1 At3g45851 unknown protein S.X. H.G.
0.55 76.3 HgAffx.19033.4.A1_x_at CK350593 - - 6e-2 At1g54410 dehydrin family protein S.X. H.G.
0.55 76.3 HgAffx.19033.4.A1_at CK350593 - - 6e-2 At1g54410 dehydrin family protein S.X. H.G.
0.46 65.5 HgAffx.17965.1.S1_at CB278425 - - 2e+0 At2g23340 AP2 domain-containing transcription factor, putative S.X. H.G.
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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX %ile GSM ID Assay Name GSE ID Experiment Title
12.7 99.5 GSM292923 95_1465.1L.R283L, Experimental replicate 1 GSE11611 Combined gene expression and QTL analysis of soybean quantitative resistance to Phytophthora sojae
11.3 99.4 GSM308556 Mature Soybean (Glycine max) pollen grains replicate 1 GSE12286 Genomic Expression Profiling of Mature Soybean (Glycine max) Pollen
10.2 99.3 GSM191087 Soybean_Cotyledon_II1 GSE7881 Expression data from soybean seed compartments with embryos at the cotyledon stage
9.1 99.2 GSM244916 4_SLO.I3U1.CEL, Experimental replicate 1 GSE9687 Expression patterns in time and space during P.sojae infection of soybean cultivars differing in quantitative resistance
8.3 99.1 GSM294268 23_2428.2I.R297P, Experimental replicate 2 GSE11611 Combined gene expression and QTL analysis of soybean quantitative resistance to Phytophthora sojae
7.3 98.9 GSM201099 Laser capture microdissected (LCM) axis plumule at the early maturation stage, biological replicate 2 GSE8112 Expression data from soybean seed compartments with embryos at the early maturation stage
6.2 98.6 GSM201107 Laser capture microdissected (LCM) axis vascular bundle at the early maturation stage, biological replicate 2 GSE8112 Expression data from soybean seed compartments with embryos at the early maturation stage
6.1 98.5 GSM201112 Laser capture microdissected (LCM) cotyledon adaxial epidermis at the early maturation stage, biological replicate 1 GSE8112 Expression data from soybean seed compartments with embryos at the early maturation stage
5.6 98.3 GSM244847 26_CON.M2W1.CEL, Experimental replicate 1 GSE9687 Expression patterns in time and space during P.sojae infection of soybean cultivars differing in quantitative resistance
5.6 98.3 GSM294422 78_2467.2J.R216U, Experimental replicate 2 GSE11611 Combined gene expression and QTL analysis of soybean quantitative resistance to Phytophthora sojae
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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF Ev BS Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.04 3e-8 59 Gma.10626.1.S1_at BE821063 - - 5e-1 At4g35460 NTRB (NADPH-DEPENDENT THIOREDOXIN REDUCTASE B) C.G. S.X.
0.04 8e-6 52 Gma.17747.1.S1_at BQ628554 - - 8e-3 At1g08500 plastocyanin-like domain-containing protein C.G. S.X.
0.04 3e-5 50 GmaAffx.87868.1.S1_at BG791048 - - 1e+0 At3g49010 ATBBC1 (ARABIDOPSIS THALIANA BREAST BASIC CONSERVED 1) C.G. S.X.
0.05 3e-5 50 Gma.7234.1.A1_at BU546540 - - 8e-1 At3g05520 F-actin capping protein alpha subunit family protein C.G. S.X.
0.04 3e-2 40 GmaAffx.1301.82.S1_at AI416916 - - 4e-19 At5g13660 unknown protein C.G. S.X.
0.04 3e-2 40 Gma.10922.1.S1_at BE608172 - - 9e-1 At4g04360 unknown protein C.G. S.X.
0.01 2e+0 34 PsAffx.C48000064_at PsAffx.C48000064 - - 3e-1 At3g26790 FUS3 (FUSCA 3) C.G. S.X.
0.01 2e+0 34 PsAffx.C130000032_at PsAffx.C130000032 - - 6e-4 At5g63740 zinc finger protein-related C.G. S.X.
0.02 2e+0 34 PsAffx.C113000005_at PsAffx.C113000005 - - 4e-1 At5g53180 PTB2 (POLYPYRIMIDINE TRACT-BINDING PROTEIN 2) C.G. S.X.
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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF Ev BS Species Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.03 5e+0 32 Arabidopsis thaliana At3g61840 825357 unknown protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;P - - - C.G. S.X.
0.04 2e-1 36 Hordeum vulgare HW02M24u_at HW02M24u - - 2e+0 At4g03120 proline-rich family protein C.G. S.X.
0.03 1e+1 32 Oryza sativa Os12g0236633 9640.m01296 - - 2e-1 At3g42385 unknown protein C.G. S.X.
0.04 7e+0 32 Populus trichocarpa PtpAffx.208371.1.S1_at pmrna16648 hypothetical protein - 5e-2 At1g58150 unknown protein C.G. S.X.
0.03 6e+0 32 Triticum aestivum TaAffx.81784.1.S1_at CA681932 - - 2e+0 At2g42990 GDSL-motif lipase/hydrolase family protein C.G. S.X.
0.03 2e+0 32 Vitis vinifera 1620040_at CD715189 - - 4e-16 Atcg00900 - C.G. S.X.
0.03 9e+0 30 Zea mays ZmAffx.135.1.A1_at AI667706 purine permease - 3e+0 At2g43540 unknown protein C.G. S.X.
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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC GO ID Process Name
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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID Link to Kappa-View Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID Link to KEGG PATHWAY Pathway Name
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