CoP: Co-expressed Biological Processes

Gene omics information

Query gene ID PsAffx.CL90Contig1_at

Gene name

Organism Glycine max

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF %ile Gene/Probe ID Repr.ID Gene Name Functional Description Ev AGI code Arabidopsis gene name S.X. H.G. Other DB
0.83 92.5 PsAffx.CL90Contig1_at PsAffx.CL90Contig1 - - 4e-3 At4g16190 cysteine proteinase, putative S.X. H.G.
0.73 88.9 GmaAffx.53629.1.S1_s_at BE584049 - - 4e+0 At2g35460 harpin-induced family protein / HIN1 family protein / harpin-responsive family protein S.X. H.G.
0.67 86.1 PsAffx.CL12Contig2_at PsAffx.CL12Contig2 - - 1e+1 At4g22520 protease inhibitor/seed storage/lipid transfer protein (LTP) family protein S.X. H.G.
0.60 80.7 PsAffx.CL2Contig6_at PsAffx.CL2Contig6 - - 2e+1 At5g51090 unknown protein S.X. H.G.
0.55 76.3 PsAffx.C98000060_s_at PsAffx.C98000060 - - 5e-1 At1g50050 pathogenesis-related protein, putative S.X. H.G.
0.55 76.3 GmaAffx.44517.1.A1_s_at BE583500 - - 7e-1 At1g20440 COR47 (COLD-REGULATED 47) S.X. H.G.
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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX %ile GSM ID Assay Name GSE ID Experiment Title
282.7 100.0 GSM171703 4_W.E.I.5, Experimental replicate W GSE7124 Plant and pathogen gene expression during infection by P.sojae of 8 soybean cultivars varying in quantitative resistance
264.7 100.0 GSM293113 28_C047.1O.R9O2L, Experimental replicate 1 GSE11611 Combined gene expression and QTL analysis of soybean quantitative resistance to Phytophthora sojae
190.9 100.0 GSM294092 4_3111.2G.R9G1L, Experimental replicate 2 GSE11611 Combined gene expression and QTL analysis of soybean quantitative resistance to Phytophthora sojae
153.5 100.0 GSM294303 54_3153.2I.R9I2L, Experimental replicate 2 GSE11611 Combined gene expression and QTL analysis of soybean quantitative resistance to Phytophthora sojae
137.9 100.0 GSM171720 8_Y.E.I.5, Experimental replicate Y GSE7124 Plant and pathogen gene expression during infection by P.sojae of 8 soybean cultivars varying in quantitative resistance
79.6 100.0 GSM293194 76_1133.1O.R084L, Experimental replicate 1 GSE11611 Combined gene expression and QTL analysis of soybean quantitative resistance to Phytophthora sojae
74.4 100.0 GSM293213 93_C039.1O.SLO1L, Experimental replicate 1 GSE11611 Combined gene expression and QTL analysis of soybean quantitative resistance to Phytophthora sojae
70.8 100.0 GSM294151 16_3139.2H.R9H3L, Experimental replicate 2 GSE11611 Combined gene expression and QTL analysis of soybean quantitative resistance to Phytophthora sojae
69.0 100.0 GSM292966 44_C221.1M.R9M1L, Experimental replicate 1 GSE11611 Combined gene expression and QTL analysis of soybean quantitative resistance to Phytophthora sojae
62.1 99.9 GSM294262 20_2405.2I.R084L, Experimental replicate 2 GSE11611 Combined gene expression and QTL analysis of soybean quantitative resistance to Phytophthora sojae
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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF Ev BS Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.30 0 644 GmaAffx.44517.1.A1_s_at BE583500 - - 7e-1 At1g20440 COR47 (COLD-REGULATED 47) C.G. S.X.
0.10 9e-14 79 PsAffx.CL729Contig1_at PsAffx.CL729Contig1 - - 2e+0 At2g05915 unknown protein C.G. S.X.
0.06 3e-10 67 HgAffx.22868.1.S1_at BG310682 - - 3e+0 At4g16190 cysteine proteinase, putative C.G. S.X.
0.02 5e-3 44 PsAffx.C3000199_at PsAffx.C3000199 - - 7e+0 At3g26561 unknown protein C.G. S.X.
0.01 8e-2 40 PsAffx.C78000012_at PsAffx.C78000012 - - 7e-2 At4g36500 unknown protein C.G. S.X.
0.02 8e-2 40 PsAffx.C42000043_at PsAffx.C42000043 - - 3e+0 At5g45090 AtPP2-A7 (Phloem protein 2-A7) C.G. S.X.
0.01 8e-2 40 PsAffx.C24000026_at PsAffx.C24000026 - - 3e-1 At5g25590 - C.G. S.X.
0.01 8e-2 40 PsAffx.C173000007_at PsAffx.C173000007 - - 3e-1 At1g02780 emb2386 (embryo defective 2386) C.G. S.X.
0.01 3e-1 38 PsAffx.C63000056_at PsAffx.C63000056 - - 2e+0 At3g61440 CYSC1 (CYSTEINE SYNTHASE C1) C.G. S.X.
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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF Ev BS Species Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.02 4e-3 44 Arabidopsis thaliana At4g16190 827311 cysteine proteinase, putative F:cysteine-type peptidase activity, cysteine-type endopeptidase activity;P:proteolysis;C:vacuole;MOPVBAF - - - C.G. S.X.
0.12 1e-4 48 Hordeum vulgare U19359_s_at U19359 - - 1e-2 At3g48340 cysteine-type endopeptidase/ cysteine-type peptidase C.G. S.X.
0.06 2e-3 46 Oryza sativa Os04g0670500 AK107506.1 - Cysteine proteinase GP-II (EC 3.4.22.-) 9e-1 At3g49340 cysteine proteinase, putative C.G. S.X.
0.05 5e-3 44 Populus trichocarpa Ptp.4450.1.S1_at BU829726 - - 2e+0 At5g36190 - C.G. S.X.
0.06 2e-4 48 Triticum aestivum TaAffx.42798.1.A1_at BQ169109 - - 5e+0 At4g23330 eukaryotic translation initiation factor-related C.G. S.X.
0.02 4e+0 32 Vitis vinifera 1613772_s_at BQ792569 hypothetical protein LOC100241957 - 6e-27 At5g43060 cysteine proteinase, putative / thiol protease, putative C.G. S.X.
0.08 3e-5 50 Zea mays Zm.9879.2.S1_at CA404875 vignain - 5e-5 At4g35350 XCP1 (XYLEM CYSTEINE PEPTIDASE 1) C.G. S.X.
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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC GO ID Process Name
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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID Link to Kappa-View Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID Link to KEGG PATHWAY Pathway Name
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