Gene omics information

Query gene ID	PsAffx.CL58Contig1_s_at
Gene name
Organism	Glycine max

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF	%ile	Gene/Probe ID	Repr.ID	Gene Name	Functional Description	Ev	AGI code	Arabidopsis gene name	S.X.	H.G.	Other DB
0.91	98.6	PsAffx.CL58Contig1_s_at	PsAffx.CL58Contig1	-	-	6e+0	At5g47930	40S ribosomal protein S27 (RPS27D)	S.X.	H.G.	Please select
0.71	87.8	PsAffx.C5151000001_s_at	PsAffx.C5151000001	-	-	7e-1	At1g22780	PFL (POINTED FIRST LEAVES)	S.X.	H.G.	Please select
0.50	71.7	GmaAffx.62760.1.S1_at	BE583548	-	-	2e-1	At4g00100	ATRPS13A (ARABIDOPSIS THALIANA RIBOSOMAL PROTEIN S13A)	S.X.	H.G.	Please select
0.50	71.7	GmaAffx.71867.1.S1_at	BI972338	-	-	1e+1	At5g62720	integral membrane HPP family protein	S.X.	H.G.	Please select
0.40	57.1	PsAffx.CL9Contig2_at	PsAffx.CL9Contig2	-	-	5e+0	At5g28060	40S ribosomal protein S24 (RPS24B)	S.X.	H.G.	Please select
0.31	42.2	PsAffx.CL81Contig1_at	PsAffx.CL81Contig1	-	-	4e-1	At4g02130	GATL6	S.X.	H.G.	Please select

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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.

Std2 GX	%ile	GSM ID	Assay Name	GSE ID	Experiment Title
96.1	100.0	GSM171675	28_W.I.M.5, Experimental replicate W	GSE7124	Plant and pathogen gene expression during infection by P.sojae of 8 soybean cultivars varying in quantitative resistance
90.2	100.0	GSM171611	13_W.E.M.5, Experimental replicate W	GSE7124	Plant and pathogen gene expression during infection by P.sojae of 8 soybean cultivars varying in quantitative resistance
66.9	100.0	GSM171660	24_Y.I.M.5, Experimental replicate Y	GSE7124	Plant and pathogen gene expression during infection by P.sojae of 8 soybean cultivars varying in quantitative resistance
64.4	99.9	GSM171693	31_Z.I.M.5, Experimental replicate Z	GSE7124	Plant and pathogen gene expression during infection by P.sojae of 8 soybean cultivars varying in quantitative resistance
63.7	99.9	GSM171619	15_W.F.M.5, Experimental replicate W	GSE7124	Plant and pathogen gene expression during infection by P.sojae of 8 soybean cultivars varying in quantitative resistance
60.7	99.9	GSM294303	54_3153.2I.R9I2L, Experimental replicate 2	GSE11611	Combined gene expression and QTL analysis of soybean quantitative resistance to Phytophthora sojae
55.7	99.9	GSM171680	29_Y.F.M.5, Experimental replicate Y	GSE7124	Plant and pathogen gene expression during infection by P.sojae of 8 soybean cultivars varying in quantitative resistance
51.5	99.9	GSM171664	25_Y.E.M.5, Experimental replicate Y	GSE7124	Plant and pathogen gene expression during infection by P.sojae of 8 soybean cultivars varying in quantitative resistance
46.7	99.9	GSM171606	12_V.I.M.5, Experimental replicate V	GSE7124	Plant and pathogen gene expression during infection by P.sojae of 8 soybean cultivars varying in quantitative resistance
43.2	99.9	GSM171703	4_W.E.I.5, Experimental replicate W	GSE7124	Plant and pathogen gene expression during infection by P.sojae of 8 soybean cultivars varying in quantitative resistance

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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF	Ev	BS	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.97	0	1237	PsAffx.CL58Contig1_at	PsAffx.CL58Contig1	-	-	6e+0	At5g47930	40S ribosomal protein S27 (RPS27D)	C.G.	S.X.	Please select
0.05	3e-18	93	PsAffx.CL137Contig1_at	PsAffx.CL137Contig1	-	-	1e-1	At5g48530	unknown protein	C.G.	S.X.	Please select
0.07	9e-9	61	HgAffx.16945.1.S1_at	CB279411	-	-	8e-1	At2g45710	40S ribosomal protein S27 (RPS27A)	C.G.	S.X.	Please select
0.06	3e-5	50	Gma.6612.1.S1_at	BE823287	-	-	2e-48	At2g45710	40S ribosomal protein S27 (RPS27A)	C.G.	S.X.	Please select
0.02	1e-4	48	Gma.11316.5.S1_at	AW201374	-	-	5e-11	At3g56150	EIF3C (EUKARYOTIC TRANSLATION INITIATION FACTOR 3C)	C.G.	S.X.	Please select
0.04	5e-4	46	GmaAffx.80850.1.S1_at	BE473956	-	-	4e+0	Atcg00440	-	C.G.	S.X.	Please select
0.04	5e-4	46	GmaAffx.28214.3.S1_at	AW164194	-	-	3e+0	At5g04850	VPS60.2	C.G.	S.X.	Please select
0.03	5e-4	46	GmaAffx.272.2.S1_at	BG882887	-	-	1e-1	At1g02870	unknown protein	C.G.	S.X.	Please select
0.04	5e-4	46	GmaAffx.22252.1.S1_at	BF071208	-	-	8e-1	At1g79960	OFP14 (OVATE FAMILY PROTEIN 14)	C.G.	S.X.	Please select

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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF	Ev	BS	Species	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.10	6e+0	32	Arabidopsis thaliana	At5g47930	834844	40S ribosomal protein S27 (RPS27D)	F:structural constituent of ribosome;P:translation, ribosome biogenesis;C:cytosolic small ribosomal subunit, cytosolic ribosome, ribosome, plasma membrane;MOPFA	-	-	-	C.G.	S.X.	Please selectath TAIR (integral)ath,osa KEGG (integral)ath PlantTribes (integral)ath,osa Gramene (integral)ath MPSS (genome)ath InParanoid (ortholog)ath Plant RBP (ortholog)ath SIGnAL (T-DNA)ath RAFL (full-length clone)ath AtGDB (genome)ath Genevestigator (expression)ath,ptr eFP Browser (expression)ath AVT (expression)ath ATTED-II (co-expression)ath AtcisDB (cis-element)ath SUBA (hydropathy)ath AtProteomeath Plant Proteome Databaseath PMN (pathway)ath,osa KaPPA-View 4 (pathway)ath RnR (over-expression)ath iHOP (report)
0.13	8e-16	83	Hordeum vulgare	Contig1364_at	Contig1364	-	-	4e-25	At3g61110	ARS27A (ARABIDOPSIS RIBOSOMAL PROTEIN S27)	C.G.	S.X.	Please select
0.09	5e-11	69	Oryza sativa	Os02g0478700	AK099723.1	-	Ribosomal protein S27 (AT3g61110/T27I15_200)	4e-19	At3g61110	ARS27A (ARABIDOPSIS RIBOSOMAL PROTEIN S27)	C.G.	S.X.	Please selectath,osa KEGG (integral)ath,osa Gramene (integral)ath,osa KaPPA-View 4 (pathway)
0.05	1e-1	38	Populus trichocarpa	PtpAffx.37497.1.A1_at	CV249619	hypothetical protein	-	3e-10	At5g47930	40S ribosomal protein S27 (RPS27D)	C.G.	S.X.	Please selectath,ptr eFP Browser (expression)
0.15	1e-19	97	Triticum aestivum	Ta.22874.1.S1_x_at	BJ227550	-	-	1e-25	At3g61110	ARS27A (ARABIDOPSIS RIBOSOMAL PROTEIN S27)	C.G.	S.X.	Please select
0.06	2e-3	42	Vitis vinifera	1620069_s_at	CB969496	hypothetical protein LOC100248991	-	9e-51	At3g61110	ARS27A (ARABIDOPSIS RIBOSOMAL PROTEIN S27)	C.G.	S.X.	Please select
0.04	6e-4	44	Zea mays	ZmAffx.485.1.S1_at	AI691349	-	-	8e-1	Atmg00140	-	C.G.	S.X.	Please select

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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC	GO ID	Process Name

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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID	Link to Kappa-View	Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID	Link to KEGG PATHWAY	Pathway Name

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