Gene omics information

Query gene ID	PsAffx.CL55Contig1_at
Gene name
Organism	Glycine max

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF	%ile	Gene/Probe ID	Repr.ID	Gene Name	Functional Description	Ev	AGI code	Arabidopsis gene name	S.X.	H.G.	Other DB
0.71	87.8	PsAffx.CL55Contig1_at	PsAffx.CL55Contig1	-	-	4e-7	At3g14600	60S ribosomal protein L18A (RPL18aC)	S.X.	H.G.	Please select
0.80	91.5	PsAffx.CL36Contig1_at	PsAffx.CL36Contig1	-	-	1e+0	At1g22780	PFL (POINTED FIRST LEAVES)	S.X.	H.G.	Please select
0.73	88.9	PsAffx.CL21Contig1_at	PsAffx.CL21Contig1	-	-	1e-6	At5g09510	40S ribosomal protein S15 (RPS15D)	S.X.	H.G.	Please select
0.67	86.1	PsAffx.CL47Contig1_at	PsAffx.CL47Contig1	-	-	2e-2	At2g39460	RPL23AA (RIBOSOMAL PROTEIN L23AA)	S.X.	H.G.	Please select
0.61	81.8	PsAffx.CL23Contig1_at	PsAffx.CL23Contig1	-	-	5e+0	At4g02040	unknown protein	S.X.	H.G.	Please select
0.50	71.7	GmaAffx.80905.1.S1_s_at	BE583527	-	-	4e-2	At2g43460	60S ribosomal protein L38 (RPL38A)	S.X.	H.G.	Please select

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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.

Std2 GX	%ile	GSM ID	Assay Name	GSE ID	Experiment Title
104.3	100.0	GSM171675	28_W.I.M.5, Experimental replicate W	GSE7124	Plant and pathogen gene expression during infection by P.sojae of 8 soybean cultivars varying in quantitative resistance
78.9	100.0	GSM171611	13_W.E.M.5, Experimental replicate W	GSE7124	Plant and pathogen gene expression during infection by P.sojae of 8 soybean cultivars varying in quantitative resistance
58.6	99.9	GSM171693	31_Z.I.M.5, Experimental replicate Z	GSE7124	Plant and pathogen gene expression during infection by P.sojae of 8 soybean cultivars varying in quantitative resistance
56.9	99.9	GSM171619	15_W.F.M.5, Experimental replicate W	GSE7124	Plant and pathogen gene expression during infection by P.sojae of 8 soybean cultivars varying in quantitative resistance
54.9	99.9	GSM171660	24_Y.I.M.5, Experimental replicate Y	GSE7124	Plant and pathogen gene expression during infection by P.sojae of 8 soybean cultivars varying in quantitative resistance
53.8	99.9	GSM171606	12_V.I.M.5, Experimental replicate V	GSE7124	Plant and pathogen gene expression during infection by P.sojae of 8 soybean cultivars varying in quantitative resistance
53.2	99.9	GSM294303	54_3153.2I.R9I2L, Experimental replicate 2	GSE11611	Combined gene expression and QTL analysis of soybean quantitative resistance to Phytophthora sojae
53.0	99.9	GSM171680	29_Y.F.M.5, Experimental replicate Y	GSE7124	Plant and pathogen gene expression during infection by P.sojae of 8 soybean cultivars varying in quantitative resistance
48.9	99.9	GSM171664	25_Y.E.M.5, Experimental replicate Y	GSE7124	Plant and pathogen gene expression during infection by P.sojae of 8 soybean cultivars varying in quantitative resistance
47.8	99.9	GSM171725	9_Z.F.M.5, Experimental replicate Z	GSE7124	Plant and pathogen gene expression during infection by P.sojae of 8 soybean cultivars varying in quantitative resistance

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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF	Ev	BS	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.73	0	652	PsAffx.psZO010iD11r_s_at	PsAffx.psZO010iD11r	-	-	1e-3	At3g14600	60S ribosomal protein L18A (RPL18aC)	C.G.	S.X.	Please select
0.02	6e-16	85	PsAffx.C172000013_at	PsAffx.C172000013	-	-	9e-2	At2g06904	nucleic acid binding / zinc ion binding	C.G.	S.X.	Please select
0.12	9e-15	81	PsAffx.psMA003xI10f_at	PsAffx.psMA003xI10f	-	-	4e-4	At2g34480	60S ribosomal protein L18A (RPL18aB)	C.G.	S.X.	Please select
0.09	1e-10	67	HgAffx.17597.1.S1_at	CB278793	-	-	4e-6	At3g14600	60S ribosomal protein L18A (RPL18aC)	C.G.	S.X.	Please select
0.08	1e-7	57	HgAffx.17636.1.S1_at	CB374789	-	-	1e-6	At3g14600	60S ribosomal protein L18A (RPL18aC)	C.G.	S.X.	Please select
0.04	5e-7	56	Gma.11251.2.S1_at	CD400392	-	-	1e-90	At2g34480	60S ribosomal protein L18A (RPL18aB)	C.G.	S.X.	Please select
0.03	1e-4	48	GmaAffx.89631.1.A1_at	CK606099	-	-	3e-79	At2g34480	60S ribosomal protein L18A (RPL18aB)	C.G.	S.X.	Please select
0.03	1e-4	48	GmaAffx.89631.1.A1_x_at	CK606099	-	-	3e-79	At2g34480	60S ribosomal protein L18A (RPL18aB)	C.G.	S.X.	Please select
0.03	1e-4	48	GmaAffx.89631.1.S1_at	CK606099	-	-	3e-79	At2g34480	60S ribosomal protein L18A (RPL18aB)	C.G.	S.X.	Please select

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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF	Ev	BS	Species	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.07	4e-7	56	Arabidopsis thaliana	At3g14600	820688	60S ribosomal protein L18A (RPL18aC)	F:structural constituent of ribosome;P:N-terminal protein myristoylation, translation, ribosome biogenesis;C:cytosolic ribosome, cytosolic large ribosomal subunit, ribosome, membrane;MOFP	-	-	-	C.G.	S.X.	Please selectath TAIR (integral)ath,osa KEGG (integral)ath PlantTribes (integral)ath,osa Gramene (integral)ath MPSS (genome)ath InParanoid (ortholog)ath Plant RBP (ortholog)ath SIGnAL (T-DNA)ath RAFL (full-length clone)ath AtGDB (genome)ath Genevestigator (expression)ath,ptr eFP Browser (expression)ath AVT (expression)ath ATTED-II (co-expression)ath AtcisDB (cis-element)ath SUBA (hydropathy)ath AtProteomeath Plant Proteome Databaseath PMN (pathway)ath,osa KaPPA-View 4 (pathway)ath RnR (over-expression)ath iHOP (report)
0.13	2e-4	46	Hordeum vulgare	EBro08_SQ004_O17_at	EBro08_SQ004_O17	-	-	3e-7	At3g14600	60S ribosomal protein L18A (RPL18aC)	C.G.	S.X.	Please select
0.15	3e-6	54	Oryza sativa	Os01g0752300	AK121755.1	-	60S ribosomal protein L18a-1	1e-87	At2g34480	60S ribosomal protein L18A (RPL18aB)	C.G.	S.X.	Please selectath,osa KEGG (integral)ath,osa Gramene (integral)ath,osa KaPPA-View 4 (pathway)
0.14	2e-9	63	Populus trichocarpa	PtpAffx.17721.1.A1_at	CV275236	-	-	3e-4	At3g14600	60S ribosomal protein L18A (RPL18aC)	C.G.	S.X.	Please selectath,ptr eFP Browser (expression)
0.12	3e-20	99	Triticum aestivum	TaAffx.91894.1.S1_at	BJ294717	-	-	2e-6	At2g34480	60S ribosomal protein L18A (RPL18aB)	C.G.	S.X.	Please select
0.07	1e-4	46	Vitis vinifera	1608129_at	CF372430	hypothetical protein LOC100265789	-	1e-87	At2g34480	60S ribosomal protein L18A (RPL18aB)	C.G.	S.X.	Please select
0.14	4e-8	57	Zea mays	Zm.16532.4.S1_at	BI423682	-	-	7e-68	At2g34480	60S ribosomal protein L18A (RPL18aB)	C.G.	S.X.	Please select

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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC	GO ID	Process Name

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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID	Link to Kappa-View	Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID	Link to KEGG PATHWAY	Pathway Name

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