CoP: Co-expressed Biological Processes

Gene omics information

Query gene ID PsAffx.CL483Contig1_at

Gene name

Organism Glycine max

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF %ile Gene/Probe ID Repr.ID Gene Name Functional Description Ev AGI code Arabidopsis gene name S.X. H.G. Other DB
0.53 74.2 PsAffx.CL483Contig1_at PsAffx.CL483Contig1 - - 8e+0 At4g01670 unknown protein S.X. H.G.
0.67 86.1 PsAffx.CL377Contig1_at PsAffx.CL377Contig1 - - 8e+0 At5g58640 selenoprotein-related S.X. H.G.
0.63 82.9 PsAffx.CL72Contig2_at PsAffx.CL72Contig2 - - 3e-1 At2g25190 unknown protein S.X. H.G.
0.63 82.9 PsAffx.CL82Contig1_at PsAffx.CL82Contig1 - - 4e-32 At2g47170 ARF1A1C S.X. H.G.
0.46 65.5 PsAffx.CL111Contig1_at PsAffx.CL111Contig1 - - 9e+0 At3g02000 ROXY1 S.X. H.G.
0.42 59.3 PsAffx.CL122Contig1_at PsAffx.CL122Contig1 - - 1e-1 At3g56350 superoxide dismutase (Mn), putative / manganese superoxide dismutase, putative S.X. H.G.
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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX %ile GSM ID Assay Name GSE ID Experiment Title
118.0 100.0 GSM293113 28_C047.1O.R9O2L, Experimental replicate 1 GSE11611 Combined gene expression and QTL analysis of soybean quantitative resistance to Phytophthora sojae
104.4 100.0 GSM294303 54_3153.2I.R9I2L, Experimental replicate 2 GSE11611 Combined gene expression and QTL analysis of soybean quantitative resistance to Phytophthora sojae
89.7 100.0 GSM171703 4_W.E.I.5, Experimental replicate W GSE7124 Plant and pathogen gene expression during infection by P.sojae of 8 soybean cultivars varying in quantitative resistance
67.7 100.0 GSM171675 28_W.I.M.5, Experimental replicate W GSE7124 Plant and pathogen gene expression during infection by P.sojae of 8 soybean cultivars varying in quantitative resistance
64.9 100.0 GSM292384 59_C093.1F.R9F1L, Experimental replicate 1 GSE11611 Combined gene expression and QTL analysis of soybean quantitative resistance to Phytophthora sojae
57.5 99.9 GSM294092 4_3111.2G.R9G1L, Experimental replicate 2 GSE11611 Combined gene expression and QTL analysis of soybean quantitative resistance to Phytophthora sojae
51.8 99.9 GSM171611 13_W.E.M.5, Experimental replicate W GSE7124 Plant and pathogen gene expression during infection by P.sojae of 8 soybean cultivars varying in quantitative resistance
45.9 99.9 GSM171677 28_Z.E.M.5, Experimental replicate Z GSE7124 Plant and pathogen gene expression during infection by P.sojae of 8 soybean cultivars varying in quantitative resistance
43.9 99.9 GSM293015 20_1089.1N.R055L, Experimental replicate 1 GSE11611 Combined gene expression and QTL analysis of soybean quantitative resistance to Phytophthora sojae
41.8 99.9 GSM171619 15_W.F.M.5, Experimental replicate W GSE7124 Plant and pathogen gene expression during infection by P.sojae of 8 soybean cultivars varying in quantitative resistance
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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF Ev BS Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.58 0 1816 PsAffx.C70000042_s_at PsAffx.C70000042 - - 1e+0 At5g12330 LRP1 (LATERAL ROOT PRIMORDIUM 1) C.G. S.X.
0.02 5e-2 40 PsAffx.C7000240_at PsAffx.C7000240 - - 1e+0 At2g28900 ATOEP16-1 (OUTER PLASTID ENVELOPE PROTEIN 16-1) C.G. S.X.
0.02 2e-1 38 PsAffx.CL477Contig1_at PsAffx.CL477Contig1 - - 2e+0 At5g14970 unknown protein C.G. S.X.
0.02 2e-1 38 PsAffx.C49000043_at PsAffx.C49000043 - - 6e-1 At1g20030 pathogenesis-related thaumatin family protein C.G. S.X.
0.01 2e-1 38 PsAffx.C169000009_at PsAffx.C169000009 - - 9e-1 At5g23260 TT16 (TRANSPARENT TESTA16) C.G. S.X.
0.03 7e-1 36 PsAffx.CL1401Contig1_at PsAffx.CL1401Contig1 - - 2e-5 At3g56350 superoxide dismutase (Mn), putative / manganese superoxide dismutase, putative C.G. S.X.
0.01 7e-1 36 PsAffx.C76000005_at PsAffx.C76000005 - - 4e-2 At5g07360 amidase family protein C.G. S.X.
0.01 7e-1 36 PsAffx.C69000015_at PsAffx.C69000015 - - 2e+1 At5g44005 unknown protein C.G. S.X.
0.02 7e-1 36 PsAffx.C4000120_at PsAffx.C4000120 - - 2e+0 At4g15800 RALFL33 (ralf-like 33) C.G. S.X.
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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF Ev BS Species Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.02 8e+0 32 Arabidopsis thaliana At4g01670 828109 unknown protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PO - - - C.G. S.X.
0.03 3e-1 36 Hordeum vulgare Contig6537_at Contig6537 - - 1e+0 At3g61640 AGP20 C.G. S.X.
0.06 3e-1 38 Oryza sativa Os.56716.1.S1_at - - - 0 C.G. S.X.
0.02 7e-1 36 Populus trichocarpa PtpAffx.214962.1.S1_at pmrna28896 hypothetical protein - 2e+1 At5g41685 mitochondrial import receptor subunit TOM7 / translocase of outer membrane 7 kDa subunit (TOM7.1) C.G. S.X.
0.03 6e-4 46 Triticum aestivum Ta.18527.1.A1_at CA638239 - - 5e+0 At3g46666 unknown protein C.G. S.X.
0.02 1e+1 30 Vitis vinifera 1615725_at CF568872 - - 2e-1 At3g55170 60S ribosomal protein L35 (RPL35C) C.G. S.X.
0.03 6e-2 38 Zea mays Zm.6107.1.A1_at AY488135.1 allene oxide synthase - 4e+0 At5g52480 - C.G. S.X.
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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC GO ID Process Name
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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID Link to Kappa-View Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID Link to KEGG PATHWAY Pathway Name
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