Gene omics information

Query gene ID	PsAffx.CL471Contig1_at
Gene name
Organism	Glycine max

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF	%ile	Gene/Probe ID	Repr.ID	Gene Name	Functional Description	Ev	AGI code	Arabidopsis gene name	S.X.	H.G.	Other DB
0.92	98.9	PsAffx.CL471Contig1_at	PsAffx.CL471Contig1	-	-	3e-1	At4g04990	unknown protein	S.X.	H.G.	Please select
0.60	80.7	PsAffx.CL435Contig1_s_at	PsAffx.CL435Contig1	-	-	2e-1	At1g66090	disease resistance protein (TIR-NBS class), putative	S.X.	H.G.	Please select
0.57	78.8	PsAffx.CL654Contig1_at	PsAffx.CL654Contig1	-	-	2e+0	At3g52010	scpl37 (serine carboxypeptidase-like 37)	S.X.	H.G.	Please select
0.54	74.8	PsAffx.psZG009xD15f_at	PsAffx.psZG009xD15f	-	-	8e-1	At5g07230	protease inhibitor/seed storage/lipid transfer protein (LTP) family protein	S.X.	H.G.	Please select
0.52	73.1	GmaAffx.35370.1.S1_s_at	BE583805	-	-	1e+1	At5g47455	unknown protein	S.X.	H.G.	Please select
0.52	73.1	PsAffx.C125000015_at	PsAffx.C125000015	-	-	2e+0	At1g20590	cyclin, putative	S.X.	H.G.	Please select
0.52	73.1	PsAffx.C7000122_at	PsAffx.C7000122	-	-	5e+0	At4g00100	ATRPS13A (ARABIDOPSIS THALIANA RIBOSOMAL PROTEIN S13A)	S.X.	H.G.	Please select
0.51	72.3	PsAffx.C103000011_at	PsAffx.C103000011	-	-	4e+0	At5g63905	unknown protein	S.X.	H.G.	Please select
0.50	71.7	PsAffx.psMA012xJ11f_at	PsAffx.psMA012xJ11f	-	-	3e+0	Atmg01030	-	S.X.	H.G.	Please select
0.50	71.7	PsAffx.CL653Contig1_at	PsAffx.CL653Contig1	-	-	6e-1	At2g04925	-	S.X.	H.G.	Please select

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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.

Std2 GX	%ile	GSM ID	Assay Name	GSE ID	Experiment Title
352.1	100.0	GSM294303	54_3153.2I.R9I2L, Experimental replicate 2	GSE11611	Combined gene expression and QTL analysis of soybean quantitative resistance to Phytophthora sojae
202.9	100.0	GSM293756	88_2113.2C.R285L, Experimental replicate 2	GSE11611	Combined gene expression and QTL analysis of soybean quantitative resistance to Phytophthora sojae
134.4	100.0	GSM294151	16_3139.2H.R9H3L, Experimental replicate 2	GSE11611	Combined gene expression and QTL analysis of soybean quantitative resistance to Phytophthora sojae
116.0	100.0	GSM293553	67_3017.2A.R9A3L, Experimental replicate 2	GSE11611	Combined gene expression and QTL analysis of soybean quantitative resistance to Phytophthora sojae
54.3	99.9	GSM293408	90_C079.1Q.R9Q2L, Experimental replicate 1	GSE11611	Combined gene expression and QTL analysis of soybean quantitative resistance to Phytophthora sojae
50.0	99.9	GSM171608	12_Y.E.I.3, Experimental replicate Y	GSE7124	Plant and pathogen gene expression during infection by P.sojae of 8 soybean cultivars varying in quantitative resistance
47.2	99.9	GSM293577	9_3009.2A.R9A2L, Experimental replicate 2	GSE11611	Combined gene expression and QTL analysis of soybean quantitative resistance to Phytophthora sojae
34.4	99.9	GSM171703	4_W.E.I.5, Experimental replicate W	GSE7124	Plant and pathogen gene expression during infection by P.sojae of 8 soybean cultivars varying in quantitative resistance
33.9	99.9	GSM294169	32_3137.2H.R9H2L, Experimental replicate 2	GSE11611	Combined gene expression and QTL analysis of soybean quantitative resistance to Phytophthora sojae
32.0	99.9	GSM294150	15_3131.2H.R9H1L, Experimental replicate 2	GSE11611	Combined gene expression and QTL analysis of soybean quantitative resistance to Phytophthora sojae

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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF	Ev	BS	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.23	1e-56	220	GmaAffx.23370.1.S1_at	BI973090	-	-	2e-1	At3g04640	glycine-rich protein	C.G.	S.X.	Please select
0.23	1e-56	220	GmaAffx.23370.1.S1_x_at	BI973090	-	-	2e-1	At3g04640	glycine-rich protein	C.G.	S.X.	Please select
0.06	3e-8	59	PsAffx.C103000047_s_at	PsAffx.C103000047	-	-	6e-1	At4g28100	unknown protein	C.G.	S.X.	Please select
0.04	1e-7	57	PsAffx.C103000045_at	PsAffx.C103000045	-	-	1e+0	At4g36660	unknown protein	C.G.	S.X.	Please select
0.02	1e-7	57	PsAffx.C103000050_at	PsAffx.C103000050	-	-	6e-1	At1g79990	protein binding / structural molecule	C.G.	S.X.	Please select
0.02	1e-7	57	PsAffx.C103000050_s_at	PsAffx.C103000050	-	-	6e-1	At1g79990	protein binding / structural molecule	C.G.	S.X.	Please select
0.07	6e-6	52	PsAffx.C617000003_at	PsAffx.C617000003	-	-	3e+0	At1g49500	unknown protein	C.G.	S.X.	Please select
0.03	2e-2	40	PsAffx.C103000049_at	PsAffx.C103000049	-	-	5e+0	At1g30473	metal ion binding	C.G.	S.X.	Please select
0.03	4e-1	36	PsAffx.psZS004xA07f_at	PsAffx.psZS004xA07f	-	-	1e+0	At3g20390	endoribonuclease L-PSP family protein	C.G.	S.X.	Please select

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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF	Ev	BS	Species	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.03	3e-1	36	Arabidopsis thaliana	At4g04990	825841	unknown protein	F:molecular_function unknown;P:biological_process unknown;C:endomembrane system;MPOFBV	-	-	-	C.G.	S.X.	Please selectath TAIR (integral)ath,osa KEGG (integral)ath PlantTribes (integral)ath,osa Gramene (integral)ath MPSS (genome)ath InParanoid (ortholog)ath Plant RBP (ortholog)ath SIGnAL (T-DNA)ath RAFL (full-length clone)ath AtGDB (genome)ath Genevestigator (expression)ath,ptr eFP Browser (expression)ath AVT (expression)ath ATTED-II (co-expression)ath AtcisDB (cis-element)ath SUBA (hydropathy)ath AtProteomeath Plant Proteome Databaseath PMN (pathway)ath,osa KaPPA-View 4 (pathway)ath RnR (over-expression)ath iHOP (report)
0.04	1e-1	36	Hordeum vulgare	Contig1710_at	Contig1710	-	-	3e-1	At5g66400	RAB18 (RESPONSIVE TO ABA 18)	C.G.	S.X.	Please select
0.04	3e-2	40	Oryza sativa	Os05g0221800	9633.m01164	-	-	1e+0	At4g24026	unknown protein	C.G.	S.X.	Please selectath,osa KEGG (integral)ath,osa Gramene (integral)ath,osa KaPPA-View 4 (pathway)
0.03	2e+0	34	Populus trichocarpa	PtpAffx.69785.2.A1_a_at	CV243355	hypothetical protein	-	3e-32	At2g38880	NF-YB1 (NUCLEAR FACTOR Y, SUBUNIT B1)	C.G.	S.X.	Please selectath,ptr eFP Browser (expression)
0.04	7e-2	38	Triticum aestivum	Ta.3910.1.A1_at	BJ255152	-	-	3e+0	At4g33710	pathogenesis-related protein, putative	C.G.	S.X.	Please select
0.03	5e+0	30	Vitis vinifera	1608674_at	CB978869	-	-	2e-1	At1g67870	glycine-rich protein	C.G.	S.X.	Please select
0.05	8e-3	40	Zea mays	ZmAffx.1198.1.A1_at	BE056195	-	-	2e-1	At1g75040	PR5 (PATHOGENESIS-RELATED GENE 5)	C.G.	S.X.	Please select

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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC	GO ID	Process Name

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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID	Link to Kappa-View	Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID	Link to KEGG PATHWAY	Pathway Name

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