Gene omics information

Query gene ID	PsAffx.CL449Contig1_at
Gene name
Organism	Glycine max

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF	%ile	Gene/Probe ID	Repr.ID	Gene Name	Functional Description	Ev	AGI code	Arabidopsis gene name	S.X.	H.G.	Other DB
0.83	92.5	PsAffx.CL449Contig1_at	PsAffx.CL449Contig1	-	-	4e+0	At3g49360	glucosamine/galactosamine-6-phosphate isomerase family protein	S.X.	H.G.	Please select
0.82	91.9	GmaAffx.58230.1.S1_s_at	BE583535	-	-	3e+0	At4g11870	unknown protein	S.X.	H.G.	Please select
0.67	86.1	PsAffx.CL1397Contig1_at	PsAffx.CL1397Contig1	-	-	8e+0	At4g17670	senescence-associated protein-related	S.X.	H.G.	Please select
0.67	86.1	PsAffx.C93000028_at	PsAffx.C93000028	-	-	1e+0	At1g28327	-	S.X.	H.G.	Please select
0.62	82.1	PsAffx.CL626Contig1_at	PsAffx.CL626Contig1	-	-	3e+0	At1g74430	MYB95 (myb domain protein 95)	S.X.	H.G.	Please select
0.61	81.8	PsAffx.CL1582Contig1_s_at	PsAffx.CL1582Contig1	-	-	2e+0	At5g62100	ATBAG2 (ARABIDOPSIS THALIANA BCL-2-ASSOCIATED ATHANOGENE 2)	S.X.	H.G.	Please select
0.58	78.8	PsAffx.CL496Contig1_at	PsAffx.CL496Contig1	-	-	2e+0	At3g27416	unknown protein	S.X.	H.G.	Please select
0.56	78.2	PsAffx.CL516Contig1_at	PsAffx.CL516Contig1	-	-	2e+0	At3g04630	WDL1	S.X.	H.G.	Please select
0.56	78.2	PsAffx.C240000005_at	PsAffx.C240000005	-	-	3e-1	At2g14260	PIP	S.X.	H.G.	Please select
0.55	76.3	PsAffx.CL2464Contig1_at	PsAffx.CL2464Contig1	-	-	5e+0	At1g57765	unknown protein	S.X.	H.G.	Please select

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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.

Std2 GX	%ile	GSM ID	Assay Name	GSE ID	Experiment Title
152.0	100.0	GSM294303	54_3153.2I.R9I2L, Experimental replicate 2	GSE11611	Combined gene expression and QTL analysis of soybean quantitative resistance to Phytophthora sojae
105.7	100.0	GSM171703	4_W.E.I.5, Experimental replicate W	GSE7124	Plant and pathogen gene expression during infection by P.sojae of 8 soybean cultivars varying in quantitative resistance
102.3	100.0	GSM293015	20_1089.1N.R055L, Experimental replicate 1	GSE11611	Combined gene expression and QTL analysis of soybean quantitative resistance to Phytophthora sojae
80.5	100.0	GSM293113	28_C047.1O.R9O2L, Experimental replicate 1	GSE11611	Combined gene expression and QTL analysis of soybean quantitative resistance to Phytophthora sojae
71.1	100.0	GSM293226	15_C065.1P.R9P2L, Experimental replicate 1	GSE11611	Combined gene expression and QTL analysis of soybean quantitative resistance to Phytophthora sojae
58.0	99.9	GSM294151	16_3139.2H.R9H3L, Experimental replicate 2	GSE11611	Combined gene expression and QTL analysis of soybean quantitative resistance to Phytophthora sojae
55.8	99.9	GSM293294	77_C067.1P.R9P3L, Experimental replicate 1	GSE11611	Combined gene expression and QTL analysis of soybean quantitative resistance to Phytophthora sojae
52.3	99.9	GSM294150	15_3131.2H.R9H1L, Experimental replicate 2	GSE11611	Combined gene expression and QTL analysis of soybean quantitative resistance to Phytophthora sojae
41.7	99.9	GSM293213	93_C039.1O.SLO1L, Experimental replicate 1	GSE11611	Combined gene expression and QTL analysis of soybean quantitative resistance to Phytophthora sojae
40.2	99.9	GSM292405	9_C101.1F.R9F2L, Experimental replicate 1	GSE11611	Combined gene expression and QTL analysis of soybean quantitative resistance to Phytophthora sojae

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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF	Ev	BS	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.11	6e-9	61	PsAffx.CL883Contig1_at	PsAffx.CL883Contig1	-	-	4e+0	At2g28420	lactoylglutathione lyase family protein / glyoxalase I family protein	C.G.	S.X.	Please select
0.05	4e-4	46	PsAffx.C262000013_at	PsAffx.C262000013	-	-	1e-3	At2g29960	CYP5 (CYCLOPHILIN 5)	C.G.	S.X.	Please select
0.02	2e-2	40	PsAffx.C21000059_at	PsAffx.C21000059	-	-	3e-1	At3g52230	unknown protein	C.G.	S.X.	Please select
0.02	8e-2	38	PsAffx.C72000050_at	PsAffx.C72000050	-	-	3e-3	At4g14380	unknown protein	C.G.	S.X.	Please select
0.01	8e-2	38	PsAffx.C155000017_at	PsAffx.C155000017	-	-	5e+0	At3g06700	60S ribosomal protein L29 (RPL29A)	C.G.	S.X.	Please select
0.02	8e-2	38	PsAffx.C11000093_at	PsAffx.C11000093	-	-	1e-1	At1g80920	J8	C.G.	S.X.	Please select
0.03	3e-1	36	PsAffx.C46000019_at	PsAffx.C46000019	-	-	5e+0	At5g64400	-	C.G.	S.X.	Please select
0.01	3e-1	36	PsAffx.C188000007_at	PsAffx.C188000007	-	-	1e-6	At3g04590	DNA-binding family protein	C.G.	S.X.	Please select
0.02	3e-1	36	Gma.431.1.S1_at	CD390728	proliferating cell nuclear antigen	-	2e-56	At1g07370	PCNA1 (PROLIFERATING CELLULAR NUCLEAR ANTIGEN)	C.G.	S.X.	Please select

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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF	Ev	BS	Species	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.03	4e+0	32	Arabidopsis thaliana	At3g49360	824098	glucosamine/galactosamine-6-phosphate isomerase family protein	F:6-phosphogluconolactonase activity, catalytic activity;P:pentose-phosphate shunt, carbohydrate metabolic process;C:plasma membrane;BOFMP	-	-	-	C.G.	S.X.	Please selectath TAIR (integral)ath,osa KEGG (integral)ath PlantTribes (integral)ath,osa Gramene (integral)ath MPSS (genome)ath InParanoid (ortholog)ath Plant RBP (ortholog)ath SIGnAL (T-DNA)ath RAFL (full-length clone)ath AtGDB (genome)ath Genevestigator (expression)ath,ptr eFP Browser (expression)ath AVT (expression)ath ATTED-II (co-expression)ath AtcisDB (cis-element)ath SUBA (hydropathy)ath AtProteomeath Plant Proteome Databaseath PMN (pathway)ath,osa KaPPA-View 4 (pathway)ath RnR (over-expression)ath iHOP (report)
0.03	7e+0	30	Hordeum vulgare	HS09J14u_at	HS09J14u	-	-	9e-1	Atcg00540	-	C.G.	S.X.	Please select
0.06	1e-1	38	Oryza sativa	Os07g0103100	AK122009.1	-	Metabotropic gamma-aminobutyric acid receptor,type B family protein	4e-17	At2g32390	ATGLR3.5 (GLUTAMATE RECEPTOR 3.5)	C.G.	S.X.	Please selectath,osa KEGG (integral)ath,osa Gramene (integral)ath,osa KaPPA-View 4 (pathway)
0.12	5e-3	42	Populus trichocarpa	PtpAffx.219935.1.S1_at	pmrna36104	hypothetical protein	-	4e-2	At2g33550	gt-2-related	C.G.	S.X.	Please selectath,ptr eFP Browser (expression)
0.05	4e+0	32	Triticum aestivum	TaAffx.4562.2.S1_at	CA739607	-	-	7e-1	At5g26210	AL4 (ALFIN-LIKE 4)	C.G.	S.X.	Please select
0.04	3e-1	34	Vitis vinifera	1614802_at	CA817579	hypothetical protein LOC100251055	-	1e-9	At3g21510	AHP1 (HISTIDINE-CONTAINING PHOSPHOTRANSMITTER 1)	C.G.	S.X.	Please select
0.04	4e-1	34	Zea mays	ZmAffx.809.1.A1_at	AI770393	-	-	4e+0	At4g25080	CHLM (magnesium-protoporphyrin IX methyltransferase)	C.G.	S.X.	Please select

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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC	GO ID	Process Name

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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID	Link to Kappa-View	Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID	Link to KEGG PATHWAY	Pathway Name

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