Gene omics information

Query gene ID	PsAffx.CL344Contig1_at
Gene name
Organism	Glycine max

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF	%ile	Gene/Probe ID	Repr.ID	Gene Name	Functional Description	Ev	AGI code	Arabidopsis gene name	S.X.	H.G.	Other DB
0.51	72.3	PsAffx.CL344Contig1_at	PsAffx.CL344Contig1	-	-	2e+0	At5g42190	ASK2 (ARABIDOPSIS SKP1-LIKE 2)	S.X.	H.G.	Please select
0.86	93.0	PsAffx.CL13Contig1_at	PsAffx.CL13Contig1	-	-	7e-2	At5g40040	60S acidic ribosomal protein P2 (RPP2E)	S.X.	H.G.	Please select
0.77	90.3	PsAffx.CL188Contig1_at	PsAffx.CL188Contig1	-	-	6e+0	At5g13100	unknown protein	S.X.	H.G.	Please select
0.74	89.2	PsAffx.psML008xI07f_s_at	PsAffx.psML008xI07f	-	-	6e-1	At4g26930	MYB97 (myb domain protein 97)	S.X.	H.G.	Please select
0.71	87.8	PsAffx.CL221Contig1_at	PsAffx.CL221Contig1	-	-	2e+0	At5g24460	unknown protein	S.X.	H.G.	Please select
0.69	86.8	PsAffx.CL199Contig1_at	PsAffx.CL199Contig1	-	-	2e+0	At4g19740	catalytic/ cation binding / chitinase/ hydrolase, hydrolyzing O-glycosyl compounds	S.X.	H.G.	Please select
0.67	86.1	PsAffx.CL57Contig1_at	PsAffx.CL57Contig1	-	-	6e-4	At1g77930	DNAJ heat shock N-terminal domain-containing protein	S.X.	H.G.	Please select
0.59	79.5	PsAffx.CL176Contig1_s_at	PsAffx.CL176Contig1	-	-	4e+0	At3g07430	emb1990 (embryo defective 1990)	S.X.	H.G.	Please select
0.57	78.8	PsAffx.CL74Contig1_at	PsAffx.CL74Contig1	-	-	4e-16	At4g38740	ROC1 (ROTAMASE CYP 1)	S.X.	H.G.	Please select
0.55	76.3	PsAffx.CL569Contig1_at	PsAffx.CL569Contig1	-	-	1e-4	At5g40580	PBB2	S.X.	H.G.	Please select

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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.

Std2 GX	%ile	GSM ID	Assay Name	GSE ID	Experiment Title
155.6	100.0	GSM294303	54_3153.2I.R9I2L, Experimental replicate 2	GSE11611	Combined gene expression and QTL analysis of soybean quantitative resistance to Phytophthora sojae
151.3	100.0	GSM294092	4_3111.2G.R9G1L, Experimental replicate 2	GSE11611	Combined gene expression and QTL analysis of soybean quantitative resistance to Phytophthora sojae
150.0	100.0	GSM171703	4_W.E.I.5, Experimental replicate W	GSE7124	Plant and pathogen gene expression during infection by P.sojae of 8 soybean cultivars varying in quantitative resistance
72.4	100.0	GSM293226	15_C065.1P.R9P2L, Experimental replicate 1	GSE11611	Combined gene expression and QTL analysis of soybean quantitative resistance to Phytophthora sojae
71.4	100.0	GSM293015	20_1089.1N.R055L, Experimental replicate 1	GSE11611	Combined gene expression and QTL analysis of soybean quantitative resistance to Phytophthora sojae
59.3	99.9	GSM292384	59_C093.1F.R9F1L, Experimental replicate 1	GSE11611	Combined gene expression and QTL analysis of soybean quantitative resistance to Phytophthora sojae
59.3	99.9	GSM293194	76_1133.1O.R084L, Experimental replicate 1	GSE11611	Combined gene expression and QTL analysis of soybean quantitative resistance to Phytophthora sojae
55.6	99.9	GSM171720	8_Y.E.I.5, Experimental replicate Y	GSE7124	Plant and pathogen gene expression during infection by P.sojae of 8 soybean cultivars varying in quantitative resistance
51.9	99.9	GSM292986	62_C223.1M.R9M2L, Experimental replicate 1	GSE11611	Combined gene expression and QTL analysis of soybean quantitative resistance to Phytophthora sojae
49.5	99.9	GSM293213	93_C039.1O.SLO1L, Experimental replicate 1	GSE11611	Combined gene expression and QTL analysis of soybean quantitative resistance to Phytophthora sojae

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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF	Ev	BS	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.35	9e-34	145	PsAffx.C57000026_at	PsAffx.C57000026	-	-	1e+0	At5g57180	CIA2 (CHLOROPLAST IMPORT APPARATUS 2)	C.G.	S.X.	Please select
0.05	6e-4	46	Gma.3293.1.S1_at	CD390735	-	-	5e-23	At1g75950	SKP1 (S PHASE KINASE-ASSOCIATED PROTEIN 1)	C.G.	S.X.	Please select
0.03	4e-2	40	GmaAffx.76002.1.S1_at	AW756630	-	-	1e-3	At2g20850	SRF1 (strubbelig receptor family 1)	C.G.	S.X.	Please select
0.04	1e-1	38	PsAffx.psZG008xP15f_at	PsAffx.psZG008xP15f	-	-	1e-2	At3g11350	-	C.G.	S.X.	Please select
0.04	6e-1	36	PsAffx.psZG004xB16f_s_at	PsAffx.psZG004xB16f	-	-	2e+0	At2g37630	AS1 (ASYMMETRIC LEAVES 1)	C.G.	S.X.	Please select
0.01	6e-1	36	PsAffx.CL202Contig1_at	PsAffx.CL202Contig1	-	-	3e+0	At2g02010	GAD4 (glutamate decarboxylase 4)	C.G.	S.X.	Please select
0.01	6e-1	36	PsAffx.C92000037_at	PsAffx.C92000037	-	-	1e+0	At5g11900	eukaryotic translation initiation factor SUI1 family protein	C.G.	S.X.	Please select
0.01	6e-1	36	PsAffx.C276000012_at	PsAffx.C276000012	-	-	2e-3	At1g16610	SR45	C.G.	S.X.	Please select
0.01	6e-1	36	PsAffx.C254000014_at	PsAffx.C254000014	-	-	8e-1	At4g08230	glycine-rich protein	C.G.	S.X.	Please select

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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF	Ev	BS	Species	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.05	2e+0	34	Arabidopsis thaliana	At5g42190	834224	ASK2 (ARABIDOPSIS SKP1-LIKE 2)	Similar to SKP1 in yeast and humans which are involved in mitotic cell cycle control and ubiquitin mediated proteolysis.	-	-	-	C.G.	S.X.	Please selectath TAIR (integral)ath,osa KEGG (integral)ath PlantTribes (integral)ath,osa Gramene (integral)ath MPSS (genome)ath InParanoid (ortholog)ath Plant RBP (ortholog)ath SIGnAL (T-DNA)ath RAFL (full-length clone)ath AtGDB (genome)ath Genevestigator (expression)ath,ptr eFP Browser (expression)ath AVT (expression)ath ATTED-II (co-expression)ath AtcisDB (cis-element)ath SUBA (hydropathy)ath AtProteomeath Plant Proteome Databaseath PMN (pathway)ath,osa KaPPA-View 4 (pathway)ath RnR (over-expression)ath iHOP (report)
0.15	3e-19	95	Hordeum vulgare	Contig12342_at	Contig12342	-	-	7e-6	At1g75950	SKP1 (S PHASE KINASE-ASSOCIATED PROTEIN 1)	C.G.	S.X.	Please select
0.19	5e-5	50	Oryza sativa	Os.27985.1.A1_at	-	-	-	0			C.G.	S.X.	Please selectath,osa KEGG (integral)ath,osa Gramene (integral)ath,osa KaPPA-View 4 (pathway)
0.11	6e-7	56	Populus trichocarpa	PtpAffx.32590.1.S1_at	CV281093	hypothetical protein	-	1e-29	At5g42190	ASK2 (ARABIDOPSIS SKP1-LIKE 2)	C.G.	S.X.	Please selectath,ptr eFP Browser (expression)
0.20	5e-19	95	Triticum aestivum	Ta.23791.2.S1_x_at	BJ214966	-	-	3e-7	At5g42190	ASK2 (ARABIDOPSIS SKP1-LIKE 2)	C.G.	S.X.	Please select
0.07	8e-3	40	Vitis vinifera	1614112_at	BQ797230	hypothetical protein LOC100252349	-	3e-11	At5g42190	ASK2 (ARABIDOPSIS SKP1-LIKE 2)	C.G.	S.X.	Please select
0.16	7e-7	54	Zea mays	Zm.11647.1.A1_at	CO532634	hypothetical protein LOC100193107	-	3e-14	At1g75950	SKP1 (S PHASE KINASE-ASSOCIATED PROTEIN 1)	C.G.	S.X.	Please select

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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC	GO ID	Process Name

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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID	Link to Kappa-View	Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID	Link to KEGG PATHWAY	Pathway Name

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