Gene omics information

Query gene ID	PsAffx.CL262Contig1_at
Gene name
Organism	Glycine max

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF	%ile	Gene/Probe ID	Repr.ID	Gene Name	Functional Description	Ev	AGI code	Arabidopsis gene name	S.X.	H.G.	Other DB
0.91	98.6	PsAffx.CL262Contig1_at	PsAffx.CL262Contig1	-	-	3e+0	At1g05330	unknown protein	S.X.	H.G.	Please select
0.77	90.3	GmaAffx.85500.1.S1_s_at	BE583956	-	-	8e-4	At1g26480	GRF12 (GENERAL REGULATORY FACTOR 12)	S.X.	H.G.	Please select
0.73	88.9	PsAffx.CL56Contig1_at	PsAffx.CL56Contig1	-	-	6e-7	At1g26480	GRF12 (GENERAL REGULATORY FACTOR 12)	S.X.	H.G.	Please select
0.53	74.2	PsAffx.CL85Contig1_at	PsAffx.CL85Contig1	-	-	4e-10	At5g53300	UBC10 (ubiquitin-conjugating enzyme 10)	S.X.	H.G.	Please select
0.44	63.3	PsAffx.CL122Contig1_at	PsAffx.CL122Contig1	-	-	1e-1	At3g56350	superoxide dismutase (Mn), putative / manganese superoxide dismutase, putative	S.X.	H.G.	Please select
0.42	59.3	PsAffx.CL45Contig1_at	PsAffx.CL45Contig1	-	-	6e-18	At5g56000	heat shock protein 81-4 (HSP81-4)	S.X.	H.G.	Please select

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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.

Std2 GX	%ile	GSM ID	Assay Name	GSE ID	Experiment Title
91.9	100.0	GSM294303	54_3153.2I.R9I2L, Experimental replicate 2	GSE11611	Combined gene expression and QTL analysis of soybean quantitative resistance to Phytophthora sojae
91.3	100.0	GSM171703	4_W.E.I.5, Experimental replicate W	GSE7124	Plant and pathogen gene expression during infection by P.sojae of 8 soybean cultivars varying in quantitative resistance
89.5	100.0	GSM171675	28_W.I.M.5, Experimental replicate W	GSE7124	Plant and pathogen gene expression during infection by P.sojae of 8 soybean cultivars varying in quantitative resistance
82.3	100.0	GSM171611	13_W.E.M.5, Experimental replicate W	GSE7124	Plant and pathogen gene expression during infection by P.sojae of 8 soybean cultivars varying in quantitative resistance
75.8	100.0	GSM171619	15_W.F.M.5, Experimental replicate W	GSE7124	Plant and pathogen gene expression during infection by P.sojae of 8 soybean cultivars varying in quantitative resistance
66.8	100.0	GSM293113	28_C047.1O.R9O2L, Experimental replicate 1	GSE11611	Combined gene expression and QTL analysis of soybean quantitative resistance to Phytophthora sojae
59.6	99.9	GSM294092	4_3111.2G.R9G1L, Experimental replicate 2	GSE11611	Combined gene expression and QTL analysis of soybean quantitative resistance to Phytophthora sojae
50.1	99.9	GSM171693	31_Z.I.M.5, Experimental replicate Z	GSE7124	Plant and pathogen gene expression during infection by P.sojae of 8 soybean cultivars varying in quantitative resistance
48.2	99.9	GSM171660	24_Y.I.M.5, Experimental replicate Y	GSE7124	Plant and pathogen gene expression during infection by P.sojae of 8 soybean cultivars varying in quantitative resistance
48.0	99.9	GSM171680	29_Y.F.M.5, Experimental replicate Y	GSE7124	Plant and pathogen gene expression during infection by P.sojae of 8 soybean cultivars varying in quantitative resistance

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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF	Ev	BS	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.03	3e-7	57	Gma.3626.2.S1_a_at	BQ612673	-	-	4e-52	At3g59920	ATGDI2 (RAB GDP DISSOCIATION INHIBITOR 2)	C.G.	S.X.	Please select
0.03	3e-7	57	Gma.3626.2.S1_x_at	BQ612673	-	-	2e-60	At3g59920	ATGDI2 (RAB GDP DISSOCIATION INHIBITOR 2)	C.G.	S.X.	Please select
0.02	7e-2	40	PsAffx.CL4Contig4_at	PsAffx.CL4Contig4	-	-	6e-2	At1g58684	40S ribosomal protein S2, putative	C.G.	S.X.	Please select
0.03	7e-2	40	GmaAffx.71873.2.A1_at	BE583818	-	-	2e-2	At1g58684	40S ribosomal protein S2, putative	C.G.	S.X.	Please select
0.03	7e-2	40	GmaAffx.71873.2.S1_s_at	BE583818	-	-	2e-2	At1g58684	40S ribosomal protein S2, putative	C.G.	S.X.	Please select
0.03	3e-1	38	PsAffx.psMY004iD05r_at	PsAffx.psMY004iD05r	-	-	1e-2	At1g58684	40S ribosomal protein S2, putative	C.G.	S.X.	Please select
0.01	3e-1	38	PsAffx.CL281Contig1_at	PsAffx.CL281Contig1	-	-	2e+0	At3g15640	cytochrome c oxidase family protein	C.G.	S.X.	Please select
0.02	3e-1	38	PsAffx.C9000104_at	PsAffx.C9000104	-	-	2e-1	At1g36240	60S ribosomal protein L30 (RPL30A)	C.G.	S.X.	Please select
0.00	3e-1	38	PsAffx.C187000016_at	PsAffx.C187000016	-	-	7e-2	At2g28600	ATP binding / ATP-dependent helicase/ nucleic acid binding	C.G.	S.X.	Please select

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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF	Ev	BS	Species	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.02	3e+0	34	Arabidopsis thaliana	At1g05330	837032	unknown protein	F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;P	-	-	-	C.G.	S.X.	Please selectath TAIR (integral)ath,osa KEGG (integral)ath PlantTribes (integral)ath,osa Gramene (integral)ath MPSS (genome)ath InParanoid (ortholog)ath Plant RBP (ortholog)ath SIGnAL (T-DNA)ath RAFL (full-length clone)ath AtGDB (genome)ath Genevestigator (expression)ath,ptr eFP Browser (expression)ath AVT (expression)ath ATTED-II (co-expression)ath AtcisDB (cis-element)ath SUBA (hydropathy)ath AtProteomeath Plant Proteome Databaseath PMN (pathway)ath,osa KaPPA-View 4 (pathway)ath RnR (over-expression)ath iHOP (report)
0.04	2e-12	73	Hordeum vulgare	Contig17153_at	Contig17153	GDP dissociation inhibitor protein	-	5e-34	At2g44100	ATGDI1 (ARABIDOPSIS THALIANA GUANOSINE NUCLEOTIDE DIPHOSPHATE DISSOCIATION INHIBITOR 1)	C.G.	S.X.	Please select
0.03	7e-12	73	Oryza sativa	Os05g0418000	AK066648.1	-	GDP dissociation inhibitor protein OsGDI1	8e-32	At3g59920	ATGDI2 (RAB GDP DISSOCIATION INHIBITOR 2)	C.G.	S.X.	Please selectath,osa KEGG (integral)ath,osa Gramene (integral)ath,osa KaPPA-View 4 (pathway)
0.02	1e+0	36	Populus trichocarpa	PtpAffx.214962.1.S1_at	pmrna28896	hypothetical protein	-	2e+1	At5g41685	mitochondrial import receptor subunit TOM7 / translocase of outer membrane 7 kDa subunit (TOM7.1)	C.G.	S.X.	Please selectath,ptr eFP Browser (expression)
0.04	9e-13	75	Triticum aestivum	Ta.4459.2.S1_at	BJ255628	-	-	1e-41	At2g44100	ATGDI1 (ARABIDOPSIS THALIANA GUANOSINE NUCLEOTIDE DIPHOSPHATE DISSOCIATION INHIBITOR 1)	C.G.	S.X.	Please select
0.02	6e-2	38	Vitis vinifera	1607399_at	CD797986	hypothetical protein LOC100260484	-	6e-37	At3g47990	zinc finger (C3HC4-type RING finger) family protein	C.G.	S.X.	Please select
0.03	2e-11	69	Zea mays	Zm.5495.1.S1_at	AY103870.1	-	-	1e-30	At2g44100	ATGDI1 (ARABIDOPSIS THALIANA GUANOSINE NUCLEOTIDE DIPHOSPHATE DISSOCIATION INHIBITOR 1)	C.G.	S.X.	Please select

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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC	GO ID	Process Name

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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID	Link to Kappa-View	Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID	Link to KEGG PATHWAY	Pathway Name

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