Gene omics information

Query gene ID	PsAffx.CL2391Contig1_at
Gene name
Organism	Glycine max

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF	%ile	Gene/Probe ID	Repr.ID	Gene Name	Functional Description	Ev	AGI code	Arabidopsis gene name	S.X.	H.G.	Other DB
0.79	90.8	PsAffx.CL2391Contig1_at	PsAffx.CL2391Contig1	-	-	1e+0	At4g22460	protease inhibitor/seed storage/lipid transfer protein (LTP) family protein	S.X.	H.G.	Please select
0.93	99.1	PsAffx.psMA013xP16f_at	PsAffx.psMA013xP16f	-	-	3e-1	At2g30560	glycine-rich protein	S.X.	H.G.	Please select
0.87	93.2	PsAffx.C94000056_at	PsAffx.C94000056	-	-	7e-1	At4g13200	unknown protein	S.X.	H.G.	Please select
0.85	92.8	PsAffx.CL1586Contig1_at	PsAffx.CL1586Contig1	-	-	6e+0	At4g03950	glucose-6-phosphate/phosphate translocator, putative	S.X.	H.G.	Please select
0.84	92.6	PsAffx.C84000055_at	PsAffx.C84000055	-	-	8e-1	At1g16230	syntaxin-related family protein	S.X.	H.G.	Please select
0.83	92.5	PsAffx.C338000008_at	PsAffx.C338000008	-	-	3e+0	At5g58540	protein kinase family protein	S.X.	H.G.	Please select
0.79	90.8	PsAffx.C161000037_s_at	PsAffx.C161000037	-	-	4e+0	At5g42780	AtHB27 (ARABIDOPSIS THALIANA HOMEOBOX PROTEIN 27)	S.X.	H.G.	Please select
0.77	90.3	PsAffx.C61000020_at	PsAffx.C61000020	-	-	9e-1	At5g19030	RNA recognition motif (RRM)-containing protein	S.X.	H.G.	Please select
0.73	88.9	PsAffx.C22000090_at	PsAffx.C22000090	-	-	3e-2	At5g55690	MADS-box protein (AGL47)	S.X.	H.G.	Please select
0.73	88.9	PsAffx.C94000055_s_at	PsAffx.C94000055	-	-	2e-8	At3g18600	DEAD/DEAH box helicase, putative	S.X.	H.G.	Please select

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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.

Std2 GX	%ile	GSM ID	Assay Name	GSE ID	Experiment Title
39.6	99.9	GSM292923	95_1465.1L.R283L, Experimental replicate 1	GSE11611	Combined gene expression and QTL analysis of soybean quantitative resistance to Phytophthora sojae
14.4	99.6	GSM171611	13_W.E.M.5, Experimental replicate W	GSE7124	Plant and pathogen gene expression during infection by P.sojae of 8 soybean cultivars varying in quantitative resistance
12.4	99.5	GSM294303	54_3153.2I.R9I2L, Experimental replicate 2	GSE11611	Combined gene expression and QTL analysis of soybean quantitative resistance to Phytophthora sojae
11.8	99.4	GSM293015	20_1089.1N.R055L, Experimental replicate 1	GSE11611	Combined gene expression and QTL analysis of soybean quantitative resistance to Phytophthora sojae
11.2	99.4	GSM171703	4_W.E.I.5, Experimental replicate W	GSE7124	Plant and pathogen gene expression during infection by P.sojae of 8 soybean cultivars varying in quantitative resistance
11.0	99.4	GSM171693	31_Z.I.M.5, Experimental replicate Z	GSE7124	Plant and pathogen gene expression during infection by P.sojae of 8 soybean cultivars varying in quantitative resistance
10.5	99.3	GSM294092	4_3111.2G.R9G1L, Experimental replicate 2	GSE11611	Combined gene expression and QTL analysis of soybean quantitative resistance to Phytophthora sojae
10.3	99.3	GSM171720	8_Y.E.I.5, Experimental replicate Y	GSE7124	Plant and pathogen gene expression during infection by P.sojae of 8 soybean cultivars varying in quantitative resistance
9.9	99.3	GSM293071	71_1055.1N.R032L, Experimental replicate 1	GSE11611	Combined gene expression and QTL analysis of soybean quantitative resistance to Phytophthora sojae
9.3	99.2	GSM293077	77_1077.1N.R046L, Experimental replicate 1	GSE11611	Combined gene expression and QTL analysis of soybean quantitative resistance to Phytophthora sojae

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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF	Ev	BS	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.05	3e-8	59	PsAffx.psML005xH12f_at	PsAffx.psML005xH12f	-	-	1e+0	At3g43150	unknown protein	C.G.	S.X.	Please select
0.01	3e-2	40	PsAffx.C39000013_s_at	PsAffx.C39000013	-	-	4e-2	At3g16600	SNF2 domain-containing protein / helicase domain-containing protein / RING finger domain-containing protein	C.G.	S.X.	Please select
0.01	1e-1	38	PsAffx.C71000071_at	PsAffx.C71000071	-	-	5e-2	At2g20840	secretory carrier membrane protein (SCAMP) family protein	C.G.	S.X.	Please select
0.01	1e-1	38	PsAffx.C54000096_at	PsAffx.C54000096	-	-	2e-2	At3g56150	EIF3C (EUKARYOTIC TRANSLATION INITIATION FACTOR 3C)	C.G.	S.X.	Please select
0.01	1e-1	38	PsAffx.C39000083_at	PsAffx.C39000083	-	-	4e-4	At2g27700	eukaryotic translation initiation factor 2 family protein / eIF-2 family protein	C.G.	S.X.	Please select
0.03	1e-1	38	PsAffx.C2000055_at	PsAffx.C2000055	-	-	5e-1	At5g49280	hydroxyproline-rich glycoprotein family protein	C.G.	S.X.	Please select
0.02	1e-1	38	Gma.14976.2.S1_at	BI945212	-	-	7e-1	At5g50260	cysteine proteinase, putative	C.G.	S.X.	Please select
0.02	4e-1	36	PsAffx.CL551Contig1_at	PsAffx.CL551Contig1	-	-	3e+0	At4g03965	protein binding / zinc ion binding	C.G.	S.X.	Please select
0.03	4e-1	36	PsAffx.CL395Contig1_at	PsAffx.CL395Contig1	-	-	1e+0	At3g17160	unknown protein	C.G.	S.X.	Please select

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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF	Ev	BS	Species	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.03	1e+0	34	Arabidopsis thaliana	At4g22460	828341	protease inhibitor/seed storage/lipid transfer protein (LTP) family protein	F:lipid binding;P:lipid transport;C:endomembrane system;P	-	-	-	C.G.	S.X.	Please selectath TAIR (integral)ath,osa KEGG (integral)ath PlantTribes (integral)ath,osa Gramene (integral)ath MPSS (genome)ath InParanoid (ortholog)ath Plant RBP (ortholog)ath SIGnAL (T-DNA)ath RAFL (full-length clone)ath AtGDB (genome)ath Genevestigator (expression)ath,ptr eFP Browser (expression)ath AVT (expression)ath ATTED-II (co-expression)ath AtcisDB (cis-element)ath SUBA (hydropathy)ath AtProteomeath Plant Proteome Databaseath PMN (pathway)ath,osa KaPPA-View 4 (pathway)ath RnR (over-expression)ath iHOP (report)
0.04	6e-4	44	Hordeum vulgare	Contig21707_at	Contig21707	-	-	3e+0	At2g16890	UDP-glucoronosyl/UDP-glucosyl transferase family protein	C.G.	S.X.	Please select
0.03	1e-2	42	Oryza sativa	Os03g0401400	9631.m02806	-	-	4e-1	At2g15760	calmodulin-binding protein	C.G.	S.X.	Please selectath,osa KEGG (integral)ath,osa Gramene (integral)ath,osa KaPPA-View 4 (pathway)
0.03	2e+0	34	Populus trichocarpa	PtpAffx.121552.1.A1_at	CV226338	hypothetical protein	-	5e+0	At4g29810	ATMKK2 (ARABIDOPSIS THALIANA MAP KINASE KINASE 2)	C.G.	S.X.	Please selectath,ptr eFP Browser (expression)
0.04	8e-2	38	Triticum aestivum	Ta.10017.1.S1_at	BJ236832	-	-	6e-2	At1g33055	unknown protein	C.G.	S.X.	Please select
0.03	1e+0	32	Vitis vinifera	1611797_at	CF208103	hypothetical protein LOC100257001	-	3e-38	At2g30060	Ran-binding protein 1b (RanBP1b)	C.G.	S.X.	Please select
0.03	5e-1	34	Zea mays	ZmAffx.809.1.A1_at	AI770393	-	-	4e+0	At4g25080	CHLM (magnesium-protoporphyrin IX methyltransferase)	C.G.	S.X.	Please select

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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC	GO ID	Process Name

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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID	Link to Kappa-View	Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID	Link to KEGG PATHWAY	Pathway Name

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