CoP: Co-expressed Biological Processes

Gene omics information

Query gene ID PsAffx.CL221Contig1_at

Gene name

Organism Glycine max

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF %ile Gene/Probe ID Repr.ID Gene Name Functional Description Ev AGI code Arabidopsis gene name S.X. H.G. Other DB
0.91 98.6 PsAffx.CL221Contig1_at PsAffx.CL221Contig1 - - 2e+0 At5g24460 unknown protein S.X. H.G.
0.77 90.3 PsAffx.CL136Contig1_at PsAffx.CL136Contig1 - - 2e+0 At1g28580 GDSL-motif lipase, putative S.X. H.G.
0.73 88.9 PsAffx.CL111Contig1_at PsAffx.CL111Contig1 - - 9e+0 At3g02000 ROXY1 S.X. H.G.
0.60 80.7 PsAffx.CL13Contig1_at PsAffx.CL13Contig1 - - 7e-2 At5g40040 60S acidic ribosomal protein P2 (RPP2E) S.X. H.G.
0.57 78.8 PsAffx.C65000037_s_at PsAffx.C65000037 - - 9e-10 At5g08680 ATP synthase beta chain, mitochondrial, putative S.X. H.G.
0.50 71.7 PsAffx.CL72Contig2_at PsAffx.CL72Contig2 - - 3e-1 At2g25190 unknown protein S.X. H.G.
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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX %ile GSM ID Assay Name GSE ID Experiment Title
167.0 100.0 GSM294303 54_3153.2I.R9I2L, Experimental replicate 2 GSE11611 Combined gene expression and QTL analysis of soybean quantitative resistance to Phytophthora sojae
71.9 100.0 GSM293015 20_1089.1N.R055L, Experimental replicate 1 GSE11611 Combined gene expression and QTL analysis of soybean quantitative resistance to Phytophthora sojae
62.9 99.9 GSM294092 4_3111.2G.R9G1L, Experimental replicate 2 GSE11611 Combined gene expression and QTL analysis of soybean quantitative resistance to Phytophthora sojae
62.6 99.9 GSM171703 4_W.E.I.5, Experimental replicate W GSE7124 Plant and pathogen gene expression during infection by P.sojae of 8 soybean cultivars varying in quantitative resistance
59.6 99.9 GSM293294 77_C067.1P.R9P3L, Experimental replicate 1 GSE11611 Combined gene expression and QTL analysis of soybean quantitative resistance to Phytophthora sojae
55.7 99.9 GSM292966 44_C221.1M.R9M1L, Experimental replicate 1 GSE11611 Combined gene expression and QTL analysis of soybean quantitative resistance to Phytophthora sojae
45.3 99.9 GSM293113 28_C047.1O.R9O2L, Experimental replicate 1 GSE11611 Combined gene expression and QTL analysis of soybean quantitative resistance to Phytophthora sojae
39.7 99.9 GSM293080 7_C033.1N.R9N3L, Experimental replicate 1 GSE11611 Combined gene expression and QTL analysis of soybean quantitative resistance to Phytophthora sojae
38.9 99.9 GSM293213 93_C039.1O.SLO1L, Experimental replicate 1 GSE11611 Combined gene expression and QTL analysis of soybean quantitative resistance to Phytophthora sojae
38.3 99.9 GSM293756 88_2113.2C.R285L, Experimental replicate 2 GSE11611 Combined gene expression and QTL analysis of soybean quantitative resistance to Phytophthora sojae
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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF Ev BS Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.01 4e-2 40 PsAffx.C96000047_at PsAffx.C96000047 - - 6e-2 At3g12810 PIE1 (PHOTOPERIOD-INDEPENDENT EARLY FLOWERING 1) C.G. S.X.
0.01 4e-2 40 PsAffx.C294000005_at PsAffx.C294000005 - - 7e-2 At1g68810 basic helix-loop-helix (bHLH) family protein C.G. S.X.
0.03 4e-2 40 PsAffx.C159000025_at PsAffx.C159000025 - - 4e+0 At4g05050 UBQ11 (UBIQUITIN 11) C.G. S.X.
0.01 2e-1 38 PsAffx.C62000029_at PsAffx.C62000029 - - 3e-1 At3g12820 AtMYB10 (myb domain protein 10) C.G. S.X.
0.01 2e-1 38 PsAffx.C4000066_at PsAffx.C4000066 - - 2e+0 At3g06360 AGP27 C.G. S.X.
0.01 2e-1 38 PsAffx.C4000032_at PsAffx.C4000032 - - 3e-4 At1g50200 ALATS (ALANYL-TRNA SYNTHETASE) C.G. S.X.
0.01 2e-1 38 PsAffx.C31000016_at PsAffx.C31000016 - - 3e-1 At3g51010 unknown protein C.G. S.X.
0.01 2e-1 38 PsAffx.C13000074_at PsAffx.C13000074 - - 2e-1 At1g11020 zinc finger (C3HC4-type RING finger) family protein C.G. S.X.
0.00 2e-1 38 PsAffx.C13000071_at PsAffx.C13000071 - - 3e-1 At1g21850 sks8 (SKU5 Similar 8) C.G. S.X.
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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF Ev BS Species Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.02 2e+0 34 Arabidopsis thaliana At5g24460 832517 unknown protein F:unknown;P:biological_process unknown;C:cell wall;PFO - - - C.G. S.X.
0.04 9e-1 34 Hordeum vulgare Contig13129_at Contig13129 - - 2e+0 At1g27730 STZ (salt tolerance zinc finger) C.G. S.X.
0.03 2e-1 38 Oryza sativa OsAffx.14551.1.S1_at - - - 0 C.G. S.X.
0.02 7e-1 36 Populus trichocarpa PtpAffx.47432.1.S1_s_at BU815065 NAC domain protein, IPR003441 /// NAC domain protein, IPR003441 - 1e-9 At5g22380 anac090 (Arabidopsis NAC domain containing protein 90) C.G. S.X.
0.03 5e-1 36 Triticum aestivum TaAffx.107399.1.S1_at CA700321 - - 4e+0 At3g53600 zinc finger (C2H2 type) family protein C.G. S.X.
0.02 9e+0 30 Vitis vinifera 1621041_at BQ794656 hypothetical protein LOC100251391 - 2e-5 At4g30200 - C.G. S.X.
0.03 8e-1 34 Zea mays Zm.19055.1.A1_at CO520813 Protein kinase catalytic domain - 2e+0 At5g20670 unknown protein C.G. S.X.
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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC GO ID Process Name
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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID Link to Kappa-View Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID Link to KEGG PATHWAY Pathway Name
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