Gene omics information

Query gene ID	PsAffx.CL2100Contig1_at
Gene name
Organism	Glycine max

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF	%ile	Gene/Probe ID	Repr.ID	Gene Name	Functional Description	Ev	AGI code	Arabidopsis gene name	S.X.	H.G.	Other DB
0.91	98.6	PsAffx.CL2100Contig1_at	PsAffx.CL2100Contig1	-	-	5e+0	At5g57181	unknown protein	S.X.	H.G.	Please select
0.36	50.8	GmaAffx.85491.1.S1_s_at	BE583694	-	-	1e+1	At5g26692	-	S.X.	H.G.	Please select
0.33	46.1	PsAffx.psHB028xM12f_s_at	PsAffx.psHB028xM12f	-	-	2e+0	At2g18020	EMB2296 (embryo defective 2296)	S.X.	H.G.	Please select
0.31	42.2	HgAffx.16208.1.S1_at	CB935526	-	-	5e+0	At5g55750	hydroxyproline-rich glycoprotein family protein	S.X.	H.G.	Please select
0.23	29.9	HgAffx.9055.1.S1_at	CB379446	-	-	2e+0	At5g49015	Expressed protein	S.X.	H.G.	Please select
0.03	5.8	HgAffx.17965.1.S1_at	CB278425	-	-	2e+0	At2g23340	AP2 domain-containing transcription factor, putative	S.X.	H.G.	Please select

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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.

Std2 GX	%ile	GSM ID	Assay Name	GSE ID	Experiment Title
33.7	99.9	GSM292892	67_1464.1L.R282P, Experimental replicate 1	GSE11611	Combined gene expression and QTL analysis of soybean quantitative resistance to Phytophthora sojae
32.9	99.9	GSM244813	18_VP9.I5U4.CEL, Experimental replicate 4	GSE9687	Expression patterns in time and space during P.sojae infection of soybean cultivars differing in quantitative resistance
28.3	99.8	GSM294268	23_2428.2I.R297P, Experimental replicate 2	GSE11611	Combined gene expression and QTL analysis of soybean quantitative resistance to Phytophthora sojae
26.3	99.8	GSM308556	Mature Soybean (Glycine max) pollen grains replicate 1	GSE12286	Genomic Expression Profiling of Mature Soybean (Glycine max) Pollen
23.9	99.8	GSM147950	Laser capture microdissected (LCM) hilum at the globular stage, biological replicate 3	GSE6414	Expression data from soybean seed compartments with embryos at the globular stage
21.2	99.7	GSM293698	35_2142.2C.R116P, Experimental replicate 2	GSE11611	Combined gene expression and QTL analysis of soybean quantitative resistance to Phytophthora sojae
18.8	99.7	GSM244856	28_V71.I1W2.CEL, Experimental replicate 2	GSE9687	Expression patterns in time and space during P.sojae infection of soybean cultivars differing in quantitative resistance
17.8	99.7	GSM292198	5_C008.1A.V7A2P, Experimental replicate 1	GSE11611	Combined gene expression and QTL analysis of soybean quantitative resistance to Phytophthora sojae
17.8	99.7	GSM292257	76_C032.1B.V7B3P, Experimental replicate 1	GSE11611	Combined gene expression and QTL analysis of soybean quantitative resistance to Phytophthora sojae
17.0	99.7	GSM244923	6_V71.M1W2.CEL, Experimental replicate 2	GSE9687	Expression patterns in time and space during P.sojae infection of soybean cultivars differing in quantitative resistance

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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF	Ev	BS	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.03	5e-7	56	PsAffx.CL59Contig1_at	PsAffx.CL59Contig1	-	-	8e-1	At5g46730	glycine-rich protein	C.G.	S.X.	Please select
0.01	2e-3	44	PsAffx.C58000085_at	PsAffx.C58000085	-	-	4e-1	At1g19350	BES1 (BRI1-EMS-SUPPRESSOR 1)	C.G.	S.X.	Please select
0.02	2e-3	44	PsAffx.C39000017_at	PsAffx.C39000017	-	-	2e-1	At1g74560	NRP1 (NAP1-RELATED PROTEIN 1)	C.G.	S.X.	Please select
0.04	1e-1	38	HgAffx.23065.1.S1_at	AF345792.1	-	-	3e+0	At5g02160	unknown protein	C.G.	S.X.	Please select
0.04	1e-1	38	HgAffx.23065.1.A1_at	AF345792.1	-	-	3e+0	At5g02160	unknown protein	C.G.	S.X.	Please select
0.03	4e-1	36	PsAffx.CL690Contig1_s_at	PsAffx.CL690Contig1	-	-	1e-1	At5g17870	PSRP6 (PLASTID-SPECIFIC 50S RIBOSOMAL PROTEIN 6)	C.G.	S.X.	Please select
0.02	4e-1	36	PsAffx.C35000096_at	PsAffx.C35000096	-	-	1e-2	At3g25400	-	C.G.	S.X.	Please select
0.02	4e-1	36	PsAffx.C180000013_at	PsAffx.C180000013	-	-	1e+1	At4g35030	protein kinase family protein	C.G.	S.X.	Please select
0.01	4e-1	36	PsAffx.C15000038_at	PsAffx.C15000038	-	-	5e-1	At5g17870	PSRP6 (PLASTID-SPECIFIC 50S RIBOSOMAL PROTEIN 6)	C.G.	S.X.	Please select

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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF	Ev	BS	Species	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.04	5e+0	32	Arabidopsis thaliana	At5g57181	6241379	unknown protein	F:unknown;P:unknown;C:unknown	-	-	-	C.G.	S.X.	Please selectath TAIR (integral)ath,osa KEGG (integral)ath PlantTribes (integral)ath,osa Gramene (integral)ath MPSS (genome)ath InParanoid (ortholog)ath Plant RBP (ortholog)ath SIGnAL (T-DNA)ath RAFL (full-length clone)ath AtGDB (genome)ath Genevestigator (expression)ath,ptr eFP Browser (expression)ath AVT (expression)ath ATTED-II (co-expression)ath AtcisDB (cis-element)ath SUBA (hydropathy)ath AtProteomeath Plant Proteome Databaseath PMN (pathway)ath,osa KaPPA-View 4 (pathway)ath RnR (over-expression)ath iHOP (report)
0.03	4e-2	38	Hordeum vulgare	Contig11090_at	Contig11090	-	-	2e-6	At2g47710	universal stress protein (USP) family protein	C.G.	S.X.	Please select
0.04	2e-1	38	Oryza sativa	OsAffx.31649.1.S1_at	-	-	-	0			C.G.	S.X.	Please selectath,osa KEGG (integral)ath,osa Gramene (integral)ath,osa KaPPA-View 4 (pathway)
0.04	3e-2	40	Populus trichocarpa	PtpAffx.129464.1.A1_at	CK094708	-	-	3e+0	At4g19370	unknown protein	C.G.	S.X.	Please selectath,ptr eFP Browser (expression)
0.04	3e-1	36	Triticum aestivum	Ta.22810.2.S1_at	CA661641	-	-	4e+0	At5g39860	PRE1 (PACLOBUTRAZOL RESISTANCE1)	C.G.	S.X.	Please select
0.03	6e+0	30	Vitis vinifera	1616494_at	CB974636	-	-	2e+0	Atmg00690	-	C.G.	S.X.	Please select
0.03	5e-1	34	Zea mays	Zm.15029.1.A1_at	CF649610	hypothetical protein LOC100274857	-	4e+0	At5g24400	emb2024 (embryo defective 2024)	C.G.	S.X.	Please select

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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC	GO ID	Process Name

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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID	Link to Kappa-View	Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID	Link to KEGG PATHWAY	Pathway Name

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