Gene omics information

Query gene ID	PsAffx.CL1Contig1_at
Gene name
Organism	Glycine max

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF	%ile	Gene/Probe ID	Repr.ID	Gene Name	Functional Description	Ev	AGI code	Arabidopsis gene name	S.X.	H.G.	Other DB
0.91	98.6	PsAffx.CL1Contig1_at	PsAffx.CL1Contig1	-	-	1e-3	At4g29390	40S ribosomal protein S30 (RPS30B)	S.X.	H.G.	Please select
0.50	71.7	PsAffx.CL1056Contig1_at	PsAffx.CL1056Contig1	-	-	2e+1	At5g06410	DNAJ heat shock N-terminal domain-containing protein	S.X.	H.G.	Please select
0.40	57.1	PsAffx.CL185Contig1_at	PsAffx.CL185Contig1	-	-	1e-3	At3g09440	heat shock cognate 70 kDa protein 3 (HSC70-3) (HSP70-3)	S.X.	H.G.	Please select
0.31	42.2	PsAffx.CL74Contig2_at	PsAffx.CL74Contig2	-	-	2e+0	At2g29960	CYP5 (CYCLOPHILIN 5)	S.X.	H.G.	Please select
0.27	35.7	PsAffx.CL121Contig1_at	PsAffx.CL121Contig1	-	-	1e-1	At1g26630	FBR12 (FUMONISIN B1-RESISTANT12)	S.X.	H.G.	Please select
0.22	28.1	PsAffx.CL1Contig43_s_at	PsAffx.CL1Contig43	-	-	7e-1	At1g65445	transferase-related	S.X.	H.G.	Please select

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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.

Std2 GX	%ile	GSM ID	Assay Name	GSE ID	Experiment Title
71.5	100.0	GSM293113	28_C047.1O.R9O2L, Experimental replicate 1	GSE11611	Combined gene expression and QTL analysis of soybean quantitative resistance to Phytophthora sojae
59.3	99.9	GSM171675	28_W.I.M.5, Experimental replicate W	GSE7124	Plant and pathogen gene expression during infection by P.sojae of 8 soybean cultivars varying in quantitative resistance
58.5	99.9	GSM171619	15_W.F.M.5, Experimental replicate W	GSE7124	Plant and pathogen gene expression during infection by P.sojae of 8 soybean cultivars varying in quantitative resistance
55.7	99.9	GSM171660	24_Y.I.M.5, Experimental replicate Y	GSE7124	Plant and pathogen gene expression during infection by P.sojae of 8 soybean cultivars varying in quantitative resistance
55.4	99.9	GSM171611	13_W.E.M.5, Experimental replicate W	GSE7124	Plant and pathogen gene expression during infection by P.sojae of 8 soybean cultivars varying in quantitative resistance
52.3	99.9	GSM171693	31_Z.I.M.5, Experimental replicate Z	GSE7124	Plant and pathogen gene expression during infection by P.sojae of 8 soybean cultivars varying in quantitative resistance
49.4	99.9	GSM171664	25_Y.E.M.5, Experimental replicate Y	GSE7124	Plant and pathogen gene expression during infection by P.sojae of 8 soybean cultivars varying in quantitative resistance
47.5	99.9	GSM171680	29_Y.F.M.5, Experimental replicate Y	GSE7124	Plant and pathogen gene expression during infection by P.sojae of 8 soybean cultivars varying in quantitative resistance
45.6	99.9	GSM293015	20_1089.1N.R055L, Experimental replicate 1	GSE11611	Combined gene expression and QTL analysis of soybean quantitative resistance to Phytophthora sojae
45.3	99.9	GSM294303	54_3153.2I.R9I2L, Experimental replicate 2	GSE11611	Combined gene expression and QTL analysis of soybean quantitative resistance to Phytophthora sojae

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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF	Ev	BS	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.71	0	734	GmaAffx.80901.1.S1_s_at	BE583611	-	-	7e-4	At4g29390	40S ribosomal protein S30 (RPS30B)	C.G.	S.X.	Please select
0.15	5e-75	282	PsAffx.CL1Contig15_at	PsAffx.CL1Contig15	-	-	2e+0	At4g30460	glycine-rich protein	C.G.	S.X.	Please select
0.03	1e-1	38	PsAffx.C129000037_at	PsAffx.C129000037	-	-	6e+0	At5g12320	ankyrin repeat family protein	C.G.	S.X.	Please select
0.11	1e-1	38	GmaAffx.93524.1.S1_s_at	CF805904	-	-	1e-17	At5g56670	40S ribosomal protein S30 (RPS30C)	C.G.	S.X.	Please select
0.01	5e-1	36	PsAffx.C23000074_at	PsAffx.C23000074	-	-	9e-1	At4g38970	fructose-bisphosphate aldolase, putative	C.G.	S.X.	Please select
0.01	5e-1	36	PsAffx.C135000026_at	PsAffx.C135000026	-	-	2e+0	At4g17670	senescence-associated protein-related	C.G.	S.X.	Please select
0.03	5e-1	36	Gma.15237.2.S1_at	CA800870	-	-	6e-59	At3g23310	protein kinase, putative	C.G.	S.X.	Please select
0.01	2e+0	34	PsAffx.CL2Contig21_at	PsAffx.CL2Contig21	-	-	2e-1	At4g14815	protease inhibitor/seed storage/lipid transfer protein (LTP) family protein	C.G.	S.X.	Please select
0.01	2e+0	34	PsAffx.C78000027_at	PsAffx.C78000027	-	-	1e-2	At1g62760	invertase/pectin methylesterase inhibitor family protein	C.G.	S.X.	Please select

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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF	Ev	BS	Species	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.08	1e-3	44	Arabidopsis thaliana	At4g29390	829060	40S ribosomal protein S30 (RPS30B)	F:structural constituent of ribosome;P:translation;C:cytosolic small ribosomal subunit, ribosome, nucleolus;MOFPAV	-	-	-	C.G.	S.X.	Please selectath TAIR (integral)ath,osa KEGG (integral)ath PlantTribes (integral)ath,osa Gramene (integral)ath MPSS (genome)ath InParanoid (ortholog)ath Plant RBP (ortholog)ath SIGnAL (T-DNA)ath RAFL (full-length clone)ath AtGDB (genome)ath Genevestigator (expression)ath,ptr eFP Browser (expression)ath AVT (expression)ath ATTED-II (co-expression)ath AtcisDB (cis-element)ath SUBA (hydropathy)ath AtProteomeath Plant Proteome Databaseath PMN (pathway)ath,osa KaPPA-View 4 (pathway)ath RnR (over-expression)ath iHOP (report)
0.11	3e-3	42	Hordeum vulgare	EBro02_SQ004_D07_at	EBro02_SQ004_D07	-	-	9e-13	At4g29390	40S ribosomal protein S30 (RPS30B)	C.G.	S.X.	Please select
0.04	3e-3	44	Oryza sativa	OsAffx.25072.1.S1_at	-	-	-	0			C.G.	S.X.	Please selectath,osa KEGG (integral)ath,osa Gramene (integral)ath,osa KaPPA-View 4 (pathway)
0.06	7e-3	42	Populus trichocarpa	PtpAffx.107618.1.A1_at	CV273672	-	-	4e-6	At5g56670	40S ribosomal protein S30 (RPS30C)	C.G.	S.X.	Please selectath,ptr eFP Browser (expression)
0.12	9e-2	38	Triticum aestivum	TaAffx.84948.1.S1_at	CA626902	-	-	7e-20	At4g29390	40S ribosomal protein S30 (RPS30B)	C.G.	S.X.	Please select
0.06	4e-4	44	Vitis vinifera	1622612_at	CB969776	hypothetical protein LOC100241142	-	1e-33	At5g56670	40S ribosomal protein S30 (RPS30C)	C.G.	S.X.	Please select
0.09	4e-2	38	Zea mays	Zm.14291.1.S1_at	BE056944	40S ribosomal protein S30	-	8e-18	At4g29390	40S ribosomal protein S30 (RPS30B)	C.G.	S.X.	Please select

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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC	GO ID	Process Name

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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID	Link to Kappa-View	Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID	Link to KEGG PATHWAY	Pathway Name

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