Gene omics information

Query gene ID PsAffx.CL1552Contig1_at
Gene name
Organism Glycine max


Co-expressed genes



As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF%ileGene/Probe IDRepr.IDGene NameFunctional DescriptionEvAGI codeArabidopsis gene nameS.X.H.G.Other DB
0.4665.5PsAffx.CL1552Contig1_atPsAffx.CL1552Contig1--7e-2At5g24316proline-rich family proteinS.X.H.G.
0.4665.5PsAffx.C241000004_atPsAffx.C241000004--5e+0At5g59050unknown proteinS.X.H.G.
0.035.8PsAffx.psMA011xJ11f_atPsAffx.psMA011xJ11f--1e+0At3g62070unknown proteinS.X.H.G.
0.013.4PsAffx.C256000003_s_atPsAffx.C256000003--9e-2At1g08340rac GTPase activating protein, putativeS.X.H.G.
0.013.4PsAffx.C396000005_atPsAffx.C396000005--2e+0At1g04880high mobility group (HMG1/2) family protein / ARID/BRIGHT DNA-binding domain-containing proteinS.X.H.G.
0.001.4PsAffx.CL205Contig1_atPsAffx.CL205Contig1--5e-2At3g50720protein kinase, putativeS.X.H.G.
Click here to hide the above table.


Specifically expressed experiments



As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX%ileGSM IDAssay NameGSE IDExperiment Title
430.7100.0GSM29430354_3153.2I.R9I2L, Experimental replicate 2GSE11611Combined gene expression and QTL analysis of soybean quantitative resistance to Phytophthora sojae
271.4100.0GSM29321393_C039.1O.SLO1L, Experimental replicate 1GSE11611Combined gene expression and QTL analysis of soybean quantitative resistance to Phytophthora sojae
100.8100.0GSM182035Laser capture microdissected (LCM) endosperm at the heart stage, biological replicate 1GSE7511Expression data from soybean seed compartments with embryos at the heart stage
83.7100.0GSM29323725_1543.1P.R053L, Experimental replicate 1GSE11611Combined gene expression and QTL analysis of soybean quantitative resistance to Phytophthora sojae
70.1100.0GSM24481018_SLO.I1W1.CEL, Experimental replicate 1GSE9687Expression patterns in time and space during P.sojae infection of soybean cultivars differing in quantitative resistance
66.9100.0GSM182046Laser capture microdissected (LCM) outer integument at the heart stage, biological replicate 2GSE7511Expression data from soybean seed compartments with embryos at the heart stage
62.599.9GSM29323624_1207.1P.R128L, Experimental replicate 1GSE11611Combined gene expression and QTL analysis of soybean quantitative resistance to Phytophthora sojae
62.099.9GSM29216823_1022.1A.R012P, Experimental replicate 1GSE11611Combined gene expression and QTL analysis of soybean quantitative resistance to Phytophthora sojae
61.099.9GSM24485528_SLO.I5L3.CEL, Experimental replicate 3GSE9687Expression patterns in time and space during P.sojae infection of soybean cultivars differing in quantitative resistance
61.099.9GSM29332212_1577.1Q.R172L, Experimental replicate 1GSE11611Combined gene expression and QTL analysis of soybean quantitative resistance to Phytophthora sojae
Click here to hide the above table.


Homologous genes



Paralogous genes



Click Gene ID to show a list of homologous genes.

HFEvBSGene IDRepr. IDGene NameFunctional descriptionEvAGI codeArabidopsis gene nameC.G.S.X.Other DB
0.046e-342PsAffx.CL149Contig1_atPsAffx.CL149Contig1--2e+0At3g15680zinc finger (Ran-binding) family proteinC.G.S.X.
0.046e-342HgAffx.15894.1.S1_atCB280462--4e-3At5g44568unknown proteinC.G.S.X.
0.022e-240PsAffx.C87000035_atPsAffx.C87000035--3e+0At4g17800DNA-binding protein-relatedC.G.S.X.
0.012e-240PsAffx.C48000065_atPsAffx.C48000065--9e-1At5g64290DIT2.1 (DICARBOXYLATE TRANSPORT 2.1)C.G.S.X.
0.041e-138HgAffx.2863.1.A1_atCK349827--9e-4At4g0900014-3-3-like protein GF14 chi / general regulatory factor 1 (GRF1)C.G.S.X.
0.041e-138HgAffx.2863.1.S1_atCK349827--9e-4At4g0900014-3-3-like protein GF14 chi / general regulatory factor 1 (GRF1)C.G.S.X.
0.034e-136PsAffx.C61000043_atPsAffx.C61000043--6e+0At2g24765ARF3 (ADP-RIBOSYLATION FACTOR 3)C.G.S.X.
0.014e-136PsAffx.C44000024_atPsAffx.C44000024--3e-2At5g08290YLS8C.G.S.X.
0.014e-136PsAffx.C38000112_s_atPsAffx.C38000112--1e+0At2g22800HAT9C.G.S.X.
Click here to hide the above table.



Orthologous genes



Click Gene ID to show a list of orthologous genes.

HFEvBSSpeciesGene IDRepr. IDGene NameFunctional descriptionEvAGI codeArabidopsis gene nameC.G.S.X.Other DB
0.047e-238Arabidopsis thalianaAt5g24316832501proline-rich family proteinF:molecular_function unknown;P:biological_process unknown;C:endomembrane system;MPBFO---C.G.S.X.
0.048e-340Hordeum vulgareContig1071_s_atContig1071--5e-3At5g19090heavy-metal-associated domain-containing proteinC.G.S.X.
0.033e-240Oryza sativaOs03g0558700AK108368.1-Conserved hypothetical protein1e-1At4g16140proline-rich family proteinC.G.S.X.
0.041e-138Populus trichocarpaPtpAffx.223128.1.S1_atpmrna40975hypothetical protein-2e-2At3g42310unknown proteinC.G.S.X.
0.047e-238Triticum aestivumTa.26854.1.A1_atCD491454--7e-5At1g20340DRT112C.G.S.X.
0.048e-236Vitis vinifera1619942_atCF568925--3e+0At3g57370transcription factor IIB (TFIIB) family proteinC.G.S.X.
0.041e-136Zea maysZm.7621.2.S1_atBE056959Hypothetical protein LOC100193790-1e-1At5g26070hydroxyproline-rich glycoprotein family proteinC.G.S.X.
Click here to hide the above table.


Biological processes



Click GO ID to show a list of genes that are associated with the GO ID.

ECCGO IDProcess Name
Click here to hide the above table.


Metabolic pathways



Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View IDLink to Kappa-ViewPathway Name



Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY IDLink to KEGG PATHWAYPathway Name
Click here to hide the above table.



Back to the CoP portal site

Back to the KAGIANA project homepage