Gene omics information

Query gene ID	PsAffx.CL13Contig1_at
Gene name
Organism	Glycine max

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF	%ile	Gene/Probe ID	Repr.ID	Gene Name	Functional Description	Ev	AGI code	Arabidopsis gene name	S.X.	H.G.	Other DB
0.91	98.6	PsAffx.CL13Contig1_at	PsAffx.CL13Contig1	-	-	7e-2	At5g40040	60S acidic ribosomal protein P2 (RPP2E)	S.X.	H.G.	Please select
0.67	86.1	PsAffx.C65000037_s_at	PsAffx.C65000037	-	-	9e-10	At5g08680	ATP synthase beta chain, mitochondrial, putative	S.X.	H.G.	Please select
0.61	81.8	PsAffx.CL221Contig1_at	PsAffx.CL221Contig1	-	-	2e+0	At5g24460	unknown protein	S.X.	H.G.	Please select
0.55	76.3	PsAffx.CL136Contig1_at	PsAffx.CL136Contig1	-	-	2e+0	At1g28580	GDSL-motif lipase, putative	S.X.	H.G.	Please select
0.50	71.7	PsAffx.CL199Contig1_at	PsAffx.CL199Contig1	-	-	2e+0	At4g19740	catalytic/ cation binding / chitinase/ hydrolase, hydrolyzing O-glycosyl compounds	S.X.	H.G.	Please select
0.38	53.3	PsAffx.CL569Contig1_at	PsAffx.CL569Contig1	-	-	1e-4	At5g40580	PBB2	S.X.	H.G.	Please select

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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.

Std2 GX	%ile	GSM ID	Assay Name	GSE ID	Experiment Title
193.6	100.0	GSM294303	54_3153.2I.R9I2L, Experimental replicate 2	GSE11611	Combined gene expression and QTL analysis of soybean quantitative resistance to Phytophthora sojae
81.0	100.0	GSM293756	88_2113.2C.R285L, Experimental replicate 2	GSE11611	Combined gene expression and QTL analysis of soybean quantitative resistance to Phytophthora sojae
77.5	100.0	GSM171703	4_W.E.I.5, Experimental replicate W	GSE7124	Plant and pathogen gene expression during infection by P.sojae of 8 soybean cultivars varying in quantitative resistance
62.4	99.9	GSM294092	4_3111.2G.R9G1L, Experimental replicate 2	GSE11611	Combined gene expression and QTL analysis of soybean quantitative resistance to Phytophthora sojae
58.0	99.9	GSM171675	28_W.I.M.5, Experimental replicate W	GSE7124	Plant and pathogen gene expression during infection by P.sojae of 8 soybean cultivars varying in quantitative resistance
55.1	99.9	GSM292384	59_C093.1F.R9F1L, Experimental replicate 1	GSE11611	Combined gene expression and QTL analysis of soybean quantitative resistance to Phytophthora sojae
53.2	99.9	GSM293015	20_1089.1N.R055L, Experimental replicate 1	GSE11611	Combined gene expression and QTL analysis of soybean quantitative resistance to Phytophthora sojae
47.9	99.9	GSM292405	9_C101.1F.R9F2L, Experimental replicate 1	GSE11611	Combined gene expression and QTL analysis of soybean quantitative resistance to Phytophthora sojae
47.0	99.9	GSM171611	13_W.E.M.5, Experimental replicate W	GSE7124	Plant and pathogen gene expression during infection by P.sojae of 8 soybean cultivars varying in quantitative resistance
44.3	99.9	GSM294151	16_3139.2H.R9H3L, Experimental replicate 2	GSE11611	Combined gene expression and QTL analysis of soybean quantitative resistance to Phytophthora sojae

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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF	Ev	BS	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.04	3e-2	40	GmaAffx.63784.1.S1_at	BU547864	-	-	3e-1	At5g40040	60S acidic ribosomal protein P2 (RPP2E)	C.G.	S.X.	Please select
0.01	1e-1	38	PsAffx.C201000002_at	PsAffx.C201000002	-	-	2e+0	At1g19020	unknown protein	C.G.	S.X.	Please select
0.03	4e-1	36	PsAffx.psZO007iC08r_s_at	PsAffx.psZO007iC08r	-	-	1e+0	At2g27180	unknown protein	C.G.	S.X.	Please select
0.03	4e-1	36	PsAffx.CL529Contig1_at	PsAffx.CL529Contig1	-	-	3e-1	At5g28630	glycine-rich protein	C.G.	S.X.	Please select
0.03	4e-1	36	PsAffx.CL1444Contig1_at	PsAffx.CL1444Contig1	-	-	3e-1	At1g04778	unknown protein	C.G.	S.X.	Please select
0.03	4e-1	36	PsAffx.C88000014_at	PsAffx.C88000014	-	-	5e+0	At2g44790	UCC2 (UCLACYANIN 2)	C.G.	S.X.	Please select
0.01	4e-1	36	PsAffx.C86000004_s_at	PsAffx.C86000004	-	-	3e-3	At2g27820	PD1 (PREPHENATE DEHYDRATASE 1)	C.G.	S.X.	Please select
0.01	4e-1	36	PsAffx.C58000091_at	PsAffx.C58000091	-	-	3e-1	At4g32280	IAA29 (INDOLE-3-ACETIC ACID INDUCIBLE 29)	C.G.	S.X.	Please select
0.01	4e-1	36	PsAffx.C54000079_at	PsAffx.C54000079	-	-	5e-1	At3g33494	unknown protein	C.G.	S.X.	Please select

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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF	Ev	BS	Species	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.05	7e-2	38	Arabidopsis thaliana	At5g40040	834001	60S acidic ribosomal protein P2 (RPP2E)	F:structural constituent of ribosome;P:translational elongation;C:cytosolic ribosome, ribosome;MPFOAB	-	-	-	C.G.	S.X.	Please selectath TAIR (integral)ath,osa KEGG (integral)ath PlantTribes (integral)ath,osa Gramene (integral)ath MPSS (genome)ath InParanoid (ortholog)ath Plant RBP (ortholog)ath SIGnAL (T-DNA)ath RAFL (full-length clone)ath AtGDB (genome)ath Genevestigator (expression)ath,ptr eFP Browser (expression)ath AVT (expression)ath ATTED-II (co-expression)ath AtcisDB (cis-element)ath SUBA (hydropathy)ath AtProteomeath Plant Proteome Databaseath PMN (pathway)ath,osa KaPPA-View 4 (pathway)ath RnR (over-expression)ath iHOP (report)
0.04	1e-1	36	Hordeum vulgare	Contig25984_at	Contig25984	-	-	9e-1	At4g24380	unknown protein	C.G.	S.X.	Please select
0.03	2e-3	44	Oryza sativa	Os03g0811700	AK059288.1	-	Pre-mRNA branch site p14-like protein	6e-31	At5g12190	RNA recognition motif (RRM)-containing protein	C.G.	S.X.	Please selectath,osa KEGG (integral)ath,osa Gramene (integral)ath,osa KaPPA-View 4 (pathway)
0.04	4e-1	36	Populus trichocarpa	PtpAffx.201057.1.S1_at	pmrna2081	hypothetical protein	-	2e+0	At4g04810	methionine sulfoxide reductase domain-containing protein / SeIR domain-containing protein	C.G.	S.X.	Please selectath,ptr eFP Browser (expression)
0.04	7e-2	38	Triticum aestivum	TaAffx.38382.1.S1_s_at	BJ235350	-	-	1e-5	At2g20280	zinc finger (CCCH-type) family protein	C.G.	S.X.	Please select
0.03	3e-1	34	Vitis vinifera	1610425_at	CF512865	-	-	4e+0	At4g08280	-	C.G.	S.X.	Please select
0.04	1e-1	36	Zea mays	Zm.12326.1.S1_at	BQ703243	hypothetical protein LOC100278585	-	8e-2	At3g56910	PSRP5 (PLASTID-SPECIFIC 50S RIBOSOMAL PROTEIN 5)	C.G.	S.X.	Please select

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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC	GO ID	Process Name

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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID	Link to Kappa-View	Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID	Link to KEGG PATHWAY	Pathway Name

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