Gene omics information

Query gene ID	PsAffx.C99000057_at
Gene name
Organism	Glycine max

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF	%ile	Gene/Probe ID	Repr.ID	Gene Name	Functional Description	Ev	AGI code	Arabidopsis gene name	S.X.	H.G.	Other DB
0.71	87.8	PsAffx.C99000057_at	PsAffx.C99000057	-	-	2e+0	At5g04490	VTE5 (vitamin E pathway gene5)	S.X.	H.G.	Please select
0.91	98.6	PsAffx.C38000019_at	PsAffx.C38000019	-	-	2e-1	At2g02061	unknown protein	S.X.	H.G.	Please select
0.80	91.5	HgAffx.18754.1.S1_at	CA940426	-	-	1e+1	At5g65050	AGL31 (AGAMOUS LIKE MADS-BOX PROTEIN 31)	S.X.	H.G.	Please select
0.80	91.5	HgAffx.2485.1.S1_at	CK350205	-	-	8e-1	At2g37510	RNA-binding protein, putative	S.X.	H.G.	Please select
0.67	86.1	PsAffx.C15000001_s_at	PsAffx.C15000001	-	-	2e+0	At2g01670	atnudt17 (Arabidopsis thaliana Nudix hydrolase homolog 17)	S.X.	H.G.	Please select
0.67	86.1	PsAffx.C11000111_at	PsAffx.C11000111	-	-	6e-3	At4g39160	DNA binding / transcription factor	S.X.	H.G.	Please select

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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.

Std2 GX	%ile	GSM ID	Assay Name	GSE ID	Experiment Title
732.8	100.0	GSM293641	68_2065.2B.R129U, Experimental replicate 2	GSE11611	Combined gene expression and QTL analysis of soybean quantitative resistance to Phytophthora sojae
58.2	99.9	GSM292923	95_1465.1L.R283L, Experimental replicate 1	GSE11611	Combined gene expression and QTL analysis of soybean quantitative resistance to Phytophthora sojae
40.6	99.9	GSM293077	77_1077.1N.R046L, Experimental replicate 1	GSE11611	Combined gene expression and QTL analysis of soybean quantitative resistance to Phytophthora sojae
39.7	99.9	GSM293215	95_C050.1O.SLO3P, Experimental replicate 1	GSE11611	Combined gene expression and QTL analysis of soybean quantitative resistance to Phytophthora sojae
28.3	99.8	GSM293101	17_1115.1O.R073L, Experimental replicate 1	GSE11611	Combined gene expression and QTL analysis of soybean quantitative resistance to Phytophthora sojae
28.0	99.8	GSM244890	36_SLO.I2W2.CEL, Experimental replicate 2	GSE9687	Expression patterns in time and space during P.sojae infection of soybean cultivars differing in quantitative resistance
27.0	99.8	GSM292838	18_C211.1L.SLL3L, Experimental replicate 1	GSE11611	Combined gene expression and QTL analysis of soybean quantitative resistance to Phytophthora sojae
18.0	99.7	GSM292836	16_1473.1L.R287U, Experimental replicate 1	GSE11611	Combined gene expression and QTL analysis of soybean quantitative resistance to Phytophthora sojae
16.0	99.6	GSM294268	23_2428.2I.R297P, Experimental replicate 2	GSE11611	Combined gene expression and QTL analysis of soybean quantitative resistance to Phytophthora sojae
15.3	99.6	GSM292448	49_C110.1G.V7G1P, Experimental replicate 1	GSE11611	Combined gene expression and QTL analysis of soybean quantitative resistance to Phytophthora sojae

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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF	Ev	BS	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.01	4e-2	42	PsAffx.C123000052_at	PsAffx.C123000052	-	-	1e-1	At1g30330	ARF6 (AUXIN RESPONSE FACTOR 6)	C.G.	S.X.	Please select
0.01	2e-1	40	PsAffx.C99000058_at	PsAffx.C99000058	-	-	5e+0	At5g27050	AGL101	C.G.	S.X.	Please select
0.01	2e-1	40	PsAffx.C49000028_at	PsAffx.C49000028	-	-	3e+0	At3g57390	AGL18	C.G.	S.X.	Please select
0.01	2e-1	40	PsAffx.C180000009_at	PsAffx.C180000009	-	-	8e+0	At5g38320	unknown protein	C.G.	S.X.	Please select
0.01	6e-1	38	PsAffx.CL1581Contig1_at	PsAffx.CL1581Contig1	-	-	2e+0	At4g16400	unknown protein	C.G.	S.X.	Please select
0.01	6e-1	38	PsAffx.C76000006_at	PsAffx.C76000006	-	-	4e+0	At2g20120	COV1 (CONTINUOUS VASCULAR RING)	C.G.	S.X.	Please select
0.01	6e-1	38	PsAffx.C45000081_at	PsAffx.C45000081	-	-	2e+0	At3g20880	zinc finger (C2H2 type) protein (WIP4)	C.G.	S.X.	Please select
0.01	6e-1	38	PsAffx.C125000034_at	PsAffx.C125000034	-	-	9e-1	At4g02630	protein kinase family protein	C.G.	S.X.	Please select
0.01	6e-1	38	GmaAffx.2483.1.S1_at	AW349775	-	-	2e+0	At2g16015	unknown protein	C.G.	S.X.	Please select

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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF	Ev	BS	Species	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.01	2e+0	36	Arabidopsis thaliana	At5g04490	830328	VTE5 (vitamin E pathway gene5)	Encodes a protein with phytol kinase activity involved in tocopherol biosynthesis.	-	-	-	C.G.	S.X.	Please selectath TAIR (integral)ath,osa KEGG (integral)ath PlantTribes (integral)ath,osa Gramene (integral)ath MPSS (genome)ath InParanoid (ortholog)ath Plant RBP (ortholog)ath SIGnAL (T-DNA)ath RAFL (full-length clone)ath AtGDB (genome)ath Genevestigator (expression)ath,ptr eFP Browser (expression)ath AVT (expression)ath ATTED-II (co-expression)ath AtcisDB (cis-element)ath SUBA (hydropathy)ath AtProteomeath Plant Proteome Databaseath PMN (pathway)ath,osa KaPPA-View 4 (pathway)ath RnR (over-expression)ath iHOP (report)
0.01	9e-1	36	Hordeum vulgare	Contig8833_at	Contig8833	-	-	2e+0	At1g63855	unknown protein	C.G.	S.X.	Please select
0.01	9e-1	38	Oryza sativa	Os04g0337700	9632.m02529	-	Aldo/keto reductase family protein	7e-2	At1g60730	aldo/keto reductase family protein	C.G.	S.X.	Please selectath,osa KEGG (integral)ath,osa Gramene (integral)ath,osa KaPPA-View 4 (pathway)
0.01	6e-1	38	Populus trichocarpa	PtpAffx.216093.1.S1_at	pmrna30666	hypothetical protein	-	3e+0	At1g09157	unknown protein	C.G.	S.X.	Please selectath,ptr eFP Browser (expression)
0.01	2e+0	36	Triticum aestivum	TaAffx.37380.1.A1_at	BJ282357	-	-	4e-1	At1g60986	SCRL4 (SCR-Like 4)	C.G.	S.X.	Please select
0.01	5e-1	36	Vitis vinifera	1615301_at	CF373109	hypothetical protein LOC100242686	-	1e+0	At2g03822	unknown protein	C.G.	S.X.	Please select
0.01	8e-1	36	Zea mays	Zm.15305.2.A1_at	BU092947	Hypothetical protein LOC100191741	-	3e-5	At1g13820	hydrolase, alpha/beta fold family protein	C.G.	S.X.	Please select

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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC	GO ID	Process Name

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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID	Link to Kappa-View	Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID	Link to KEGG PATHWAY	Pathway Name

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