Gene omics information

Query gene ID	PsAffx.C99000030_s_at
Gene name
Organism	Glycine max

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF	%ile	Gene/Probe ID	Repr.ID	Gene Name	Functional Description	Ev	AGI code	Arabidopsis gene name	S.X.	H.G.	Other DB
0.91	98.6	PsAffx.C99000030_s_at	PsAffx.C99000030	-	-	2e+0	At5g25940	early nodulin-related	S.X.	H.G.	Please select
0.33	46.1	PsAffx.CL794Contig1_at	PsAffx.CL794Contig1	-	-	4e+0	At2g30530	unknown protein	S.X.	H.G.	Please select
0.29	39.0	PsAffx.C10000072_at	PsAffx.C10000072	-	-	2e+0	At2g20616	unknown protein	S.X.	H.G.	Please select
0.15	18.7	GmaAffx.30928.1.S1_s_at	BE583905	-	-	2e-1	At3g06545	unknown protein	S.X.	H.G.	Please select
0.06	9.0	PsAffx.C173000014_at	PsAffx.C173000014	-	-	3e-1	At2g45800	LIM domain-containing protein	S.X.	H.G.	Please select
0.06	9.0	PsAffx.psHB044xB02f_at	PsAffx.psHB044xB02f	-	-	6e-1	At1g13480	unknown protein	S.X.	H.G.	Please select

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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.

Std2 GX	%ile	GSM ID	Assay Name	GSE ID	Experiment Title
130.9	100.0	GSM292923	95_1465.1L.R283L, Experimental replicate 1	GSE11611	Combined gene expression and QTL analysis of soybean quantitative resistance to Phytophthora sojae
89.0	100.0	GSM171703	4_W.E.I.5, Experimental replicate W	GSE7124	Plant and pathogen gene expression during infection by P.sojae of 8 soybean cultivars varying in quantitative resistance
65.3	100.0	GSM294303	54_3153.2I.R9I2L, Experimental replicate 2	GSE11611	Combined gene expression and QTL analysis of soybean quantitative resistance to Phytophthora sojae
55.6	99.9	GSM171611	13_W.E.M.5, Experimental replicate W	GSE7124	Plant and pathogen gene expression during infection by P.sojae of 8 soybean cultivars varying in quantitative resistance
45.0	99.9	GSM171675	28_W.I.M.5, Experimental replicate W	GSE7124	Plant and pathogen gene expression during infection by P.sojae of 8 soybean cultivars varying in quantitative resistance
44.7	99.9	GSM294092	4_3111.2G.R9G1L, Experimental replicate 2	GSE11611	Combined gene expression and QTL analysis of soybean quantitative resistance to Phytophthora sojae
42.0	99.9	GSM171660	24_Y.I.M.5, Experimental replicate Y	GSE7124	Plant and pathogen gene expression during infection by P.sojae of 8 soybean cultivars varying in quantitative resistance
41.0	99.9	GSM293113	28_C047.1O.R9O2L, Experimental replicate 1	GSE11611	Combined gene expression and QTL analysis of soybean quantitative resistance to Phytophthora sojae
39.1	99.9	GSM171712	6_Y.L.M.5, Experimental replicate Y	GSE7124	Plant and pathogen gene expression during infection by P.sojae of 8 soybean cultivars varying in quantitative resistance
37.1	99.9	GSM171606	12_V.I.M.5, Experimental replicate V	GSE7124	Plant and pathogen gene expression during infection by P.sojae of 8 soybean cultivars varying in quantitative resistance

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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF	Ev	BS	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.93	0	1824	PsAffx.C99000030_at	PsAffx.C99000030	-	-	2e+0	At5g25940	early nodulin-related	C.G.	S.X.	Please select
0.02	3e-3	44	PsAffx.C115000005_at	PsAffx.C115000005	-	-	3e-8	At1g56170	NF-YC2 (NUCLEAR FACTOR Y, SUBUNIT C2)	C.G.	S.X.	Please select
0.01	5e-2	40	PsAffx.C160000001_at	PsAffx.C160000001	-	-	2e+0	At5g09805	IDL3 (INFLORESCENCE DEFICIENT IN ABSCISSION (IDA)-LIKE 3)	C.G.	S.X.	Please select
0.01	5e-2	40	PsAffx.C118000053_at	PsAffx.C118000053	-	-	1e+1	At4g21610	LOL2 (LSD ONE LIKE 2)	C.G.	S.X.	Please select
0.02	5e-2	40	GmaAffx.87791.1.S1_at	BQ740530	-	-	2e+0	At3g48185	unknown protein	C.G.	S.X.	Please select
0.02	2e-1	38	PsAffx.CL283Contig1_at	PsAffx.CL283Contig1	-	-	6e-2	At4g10970	unknown protein	C.G.	S.X.	Please select
0.02	2e-1	38	PsAffx.CL203Contig3_at	PsAffx.CL203Contig3	-	-	8e+0	At4g38092	unknown protein	C.G.	S.X.	Please select
0.02	2e-1	38	PsAffx.CL203Contig1_at	PsAffx.CL203Contig1	-	-	5e+0	At5g35920	CYP79A4P	C.G.	S.X.	Please select
0.02	2e-1	38	PsAffx.C99000034_at	PsAffx.C99000034	-	-	2e+1	At5g25940	early nodulin-related	C.G.	S.X.	Please select

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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF	Ev	BS	Species	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.03	2e+0	34	Arabidopsis thaliana	At5g25940	832663	early nodulin-related	F:molecular_function unknown;P:unknown;C:mitochondrion;P	-	-	-	C.G.	S.X.	Please selectath TAIR (integral)ath,osa KEGG (integral)ath PlantTribes (integral)ath,osa Gramene (integral)ath MPSS (genome)ath InParanoid (ortholog)ath Plant RBP (ortholog)ath SIGnAL (T-DNA)ath RAFL (full-length clone)ath AtGDB (genome)ath Genevestigator (expression)ath,ptr eFP Browser (expression)ath AVT (expression)ath ATTED-II (co-expression)ath AtcisDB (cis-element)ath SUBA (hydropathy)ath AtProteomeath Plant Proteome Databaseath PMN (pathway)ath,osa KaPPA-View 4 (pathway)ath RnR (over-expression)ath iHOP (report)
0.03	1e-3	44	Hordeum vulgare	Contig2094_s_at	Contig2094	-	-	3e-100	At5g02960	40S ribosomal protein S23 (RPS23B)	C.G.	S.X.	Please select
0.04	1e-3	46	Oryza sativa	OsAffx.28335.1.S1_at	-	-	-	0			C.G.	S.X.	Please selectath,osa KEGG (integral)ath,osa Gramene (integral)ath,osa KaPPA-View 4 (pathway)
0.03	1e-2	42	Populus trichocarpa	PtpAffx.218478.1.S1_at	pmrna34106	hypothetical protein	-	3e+0	At4g39550	kelch repeat-containing F-box family protein	C.G.	S.X.	Please selectath,ptr eFP Browser (expression)
0.03	2e-1	38	Triticum aestivum	TaAffx.53150.1.S1_at	CA695996	-	-	2e-2	At1g68650	unknown protein	C.G.	S.X.	Please select
0.02	2e-1	36	Vitis vinifera	1615066_at	BQ792737	hypothetical protein LOC100250557	-	7e-8	At2g22370	unknown protein	C.G.	S.X.	Please select
0.05	2e-2	40	Zea mays	Zm.16749.1.A1_at	CF648074	inhibitor of apoptosis-like protein	-	6e+0	At3g63410	APG1 (ALBINO OR PALE GREEN MUTANT 1)	C.G.	S.X.	Please select

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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC	GO ID	Process Name

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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID	Link to Kappa-View	Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID	Link to KEGG PATHWAY	Pathway Name

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