Gene omics information

Query gene ID	PsAffx.C85000047_at
Gene name
Organism	Glycine max

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF	%ile	Gene/Probe ID	Repr.ID	Gene Name	Functional Description	Ev	AGI code	Arabidopsis gene name	S.X.	H.G.	Other DB
0.90	93.7	PsAffx.C85000047_at	PsAffx.C85000047	-	-	1e-1	At3g21860	ASK10 (ARABIDOPSIS SKP1-LIKE 10)	S.X.	H.G.	Please select
0.94	99.2	HgAffx.11003.1.S1_at	CB824101	-	-	4e+0	At3g28630	-	S.X.	H.G.	Please select
0.94	99.2	PsAffx.C1000175_at	PsAffx.C1000175	-	-	5e+0	At5g23290	PDF5 (PREFOLDIN 5)	S.X.	H.G.	Please select
0.91	98.6	PsAffx.C115000050_s_at	PsAffx.C115000050	-	-	2e+0	At5g66490	unknown protein	S.X.	H.G.	Please select
0.90	93.7	GmaAffx.55284.1.S1_at	BM108343	-	-	3e+0	At5g10390	histone H3	S.X.	H.G.	Please select
0.90	93.7	HgAffx.5776.1.S1_at	CB826435	-	-	1e+0	At5g59030	COPT1 (copper transporter 1)	S.X.	H.G.	Please select
0.89	93.5	PsAffx.C6000193_at	PsAffx.C6000193	-	-	1e+1	Atmg00450	-	S.X.	H.G.	Please select
0.88	93.4	HgAffx.3013.1.S1_at	CK349173	-	-	3e-1	At1g66890	-	S.X.	H.G.	Please select
0.88	93.4	PsAffx.C68000072_at	PsAffx.C68000072	-	-	4e+0	At2g41410	calmodulin, putative	S.X.	H.G.	Please select
0.87	93.2	PsAffx.C63000067_at	PsAffx.C63000067	-	-	1e-1	At5g05150	AtATG18e	S.X.	H.G.	Please select

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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.

Std2 GX	%ile	GSM ID	Assay Name	GSE ID	Experiment Title
1236.6	100.0	GSM292923	95_1465.1L.R283L, Experimental replicate 1	GSE11611	Combined gene expression and QTL analysis of soybean quantitative resistance to Phytophthora sojae
53.0	99.9	GSM292916	89_C203.1L.SLL1U, Experimental replicate 1	GSE11611	Combined gene expression and QTL analysis of soybean quantitative resistance to Phytophthora sojae
32.6	99.9	GSM244809	17_VP9.I3U2.CEL, Experimental replicate 2	GSE9687	Expression patterns in time and space during P.sojae infection of soybean cultivars differing in quantitative resistance
25.0	99.8	GSM292162	15-1002.1A.R001P, Experimental replicate 1	GSE11611	Combined gene expression and QTL analysis of soybean quantitative resistance to Phytophthora sojae
20.8	99.7	GSM294494	59_3189.2K.SLK2L, Experimental replicate 2	GSE11611	Combined gene expression and QTL analysis of soybean quantitative resistance to Phytophthora sojae
20.7	99.7	GSM147948	Laser capture microdissected (LCM) hilum at the globular stage, biological replicate 1	GSE6414	Expression data from soybean seed compartments with embryos at the globular stage
20.7	99.7	GSM292872	49_1469.1L.R285U, Experimental replicate 1	GSE11611	Combined gene expression and QTL analysis of soybean quantitative resistance to Phytophthora sojae
20.4	99.7	GSM292172	28_1025.1A.R014L, Experimental replicate 1	GSE11611	Combined gene expression and QTL analysis of soybean quantitative resistance to Phytophthora sojae
19.5	99.7	GSM294369	2_2439.2J.R135L, Experimental replicate 2	GSE11611	Combined gene expression and QTL analysis of soybean quantitative resistance to Phytophthora sojae
19.4	99.7	GSM244838	24_CON.I3U3.CEL, Experimental replicate 3	GSE9687	Expression patterns in time and space during P.sojae infection of soybean cultivars differing in quantitative resistance

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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF	Ev	BS	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.28	6e-23	109	PsAffx.C85000051_at	PsAffx.C85000051	-	-	4e+0	At4g26800	pentatricopeptide (PPR) repeat-containing protein	C.G.	S.X.	Please select
0.21	1e-14	81	PsAffx.C85000050_at	PsAffx.C85000050	-	-	8e+0	At5g19210	DEAD/DEAH box helicase, putative	C.G.	S.X.	Please select
0.16	9e-13	75	PsAffx.C85000070_s_at	PsAffx.C85000070	-	-	1e+0	At4g04020	FIB (FIBRILLIN)	C.G.	S.X.	Please select
0.01	8e-4	46	PsAffx.C5000049_at	PsAffx.C5000049	-	-	1e+0	At1g18710	AtMYB47 (myb domain protein 47)	C.G.	S.X.	Please select
0.02	1e-2	42	PsAffx.CL2062Contig1_at	PsAffx.CL2062Contig1	-	-	6e+0	At3g16670	unknown protein	C.G.	S.X.	Please select
0.01	1e-2	42	PsAffx.C230000020_s_at	PsAffx.C230000020	-	-	2e+0	At5g06660	unknown protein	C.G.	S.X.	Please select
0.04	1e-2	42	Gma.17540.1.S1_at	CD409718	-	-	8e-2	At2g04340	unknown protein	C.G.	S.X.	Please select
0.03	2e-1	38	PsAffx.CL212Contig1_at	PsAffx.CL212Contig1	-	-	6e-1	At2g21160	translocon-associated protein alpha (TRAP alpha) family protein	C.G.	S.X.	Please select
0.02	2e-1	38	PsAffx.CL132Contig2_at	PsAffx.CL132Contig2	-	-	9e-3	At3g63080	ATGPX5 (glutathione peroxidase 5)	C.G.	S.X.	Please select

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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF	Ev	BS	Species	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.03	1e-1	38	Arabidopsis thaliana	At3g21860	821740	ASK10 (ARABIDOPSIS SKP1-LIKE 10)	F:ubiquitin-protein ligase activity, protein binding;P:ubiquitin-dependent protein catabolic process;C:SCF ubiquitin ligase complex;MPOFV	-	-	-	C.G.	S.X.	Please selectath TAIR (integral)ath,osa KEGG (integral)ath PlantTribes (integral)ath,osa Gramene (integral)ath MPSS (genome)ath InParanoid (ortholog)ath Plant RBP (ortholog)ath SIGnAL (T-DNA)ath RAFL (full-length clone)ath AtGDB (genome)ath Genevestigator (expression)ath,ptr eFP Browser (expression)ath AVT (expression)ath ATTED-II (co-expression)ath AtcisDB (cis-element)ath SUBA (hydropathy)ath AtProteomeath Plant Proteome Databaseath PMN (pathway)ath,osa KaPPA-View 4 (pathway)ath RnR (over-expression)ath iHOP (report)
0.02	1e+0	34	Hordeum vulgare	Contig16001_at	Contig16001	-	-	2e-12	At4g30440	GAE1 (UDP-D-GLUCURONATE 4-EPIMERASE 1)	C.G.	S.X.	Please select
0.03	3e-1	38	Oryza sativa	OsAffx.4614.1.S1_at	-	-	-	0			C.G.	S.X.	Please selectath,osa KEGG (integral)ath,osa Gramene (integral)ath,osa KaPPA-View 4 (pathway)
0.03	3e+0	34	Populus trichocarpa	PtpAffx.216510.1.S1_at	pmrna31334	hypothetical protein	-	5e+0	At1g78410	VQ motif-containing protein	C.G.	S.X.	Please selectath,ptr eFP Browser (expression)
0.03	2e+0	34	Triticum aestivum	TaAffx.8949.1.S1_at	CA617569	-	-	2e-1	At5g47770	FPS1 (FARNESYL DIPHOSPHATE SYNTHASE 1)	C.G.	S.X.	Please select
0.02	2e+0	32	Vitis vinifera	1617566_at	CF213777	hypothetical protein LOC100247823	-	1e+0	At3g17310	methyltransferase family protein	C.G.	S.X.	Please select
0.02	9e-1	34	Zea mays	Zm.4040.1.A1_at	AI834032	-	-	5e+0	At1g53785	unknown protein	C.G.	S.X.	Please select

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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC	GO ID	Process Name

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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID	Link to Kappa-View	Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID	Link to KEGG PATHWAY	Pathway Name

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