Gene omics information

Query gene ID	PsAffx.C85000046_at
Gene name
Organism	Glycine max

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF	%ile	Gene/Probe ID	Repr.ID	Gene Name	Functional Description	Ev	AGI code	Arabidopsis gene name	S.X.	H.G.	Other DB
0.91	98.6	PsAffx.C85000046_at	PsAffx.C85000046	-	-	6e+0	At3g43829	unknown protein	S.X.	H.G.	Please select
0.40	57.1	PsAffx.C799000001_at	PsAffx.C799000001	-	-	5e+0	At1g67775	CLE8 (CLAVATA3/ESR-RELATED 8)	S.X.	H.G.	Please select
0.36	50.8	PsAffx.C99000057_at	PsAffx.C99000057	-	-	2e+0	At5g04490	VTE5 (vitamin E pathway gene5)	S.X.	H.G.	Please select
0.29	39.0	PsAffx.C15000001_s_at	PsAffx.C15000001	-	-	2e+0	At2g01670	atnudt17 (Arabidopsis thaliana Nudix hydrolase homolog 17)	S.X.	H.G.	Please select
0.00	1.4	PsAffx.C8000052_at	PsAffx.C8000052	-	-	4e-1	At2g15280	reticulon family protein (RTNLB10)	S.X.	H.G.	Please select
0.00	1.4	HgAffx.16579.1.S1_at	CB279777	-	-	9e-1	At4g13200	unknown protein	S.X.	H.G.	Please select

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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.

Std2 GX	%ile	GSM ID	Assay Name	GSE ID	Experiment Title
239.0	100.0	GSM293641	68_2065.2B.R129U, Experimental replicate 2	GSE11611	Combined gene expression and QTL analysis of soybean quantitative resistance to Phytophthora sojae
175.8	100.0	GSM292923	95_1465.1L.R283L, Experimental replicate 1	GSE11611	Combined gene expression and QTL analysis of soybean quantitative resistance to Phytophthora sojae
59.6	99.9	GSM292189	4_C007.1A.V7A2L, Experimental replicate 1	GSE11611	Combined gene expression and QTL analysis of soybean quantitative resistance to Phytophthora sojae
55.8	99.9	GSM292838	18_C211.1L.SLL3L, Experimental replicate 1	GSE11611	Combined gene expression and QTL analysis of soybean quantitative resistance to Phytophthora sojae
49.7	99.9	GSM293137	4_C053.1O.R9O3U, Experimental replicate 1	GSE11611	Combined gene expression and QTL analysis of soybean quantitative resistance to Phytophthora sojae
47.5	99.9	GSM292229	25_C029.1B.R9B2L, Experimental replicate 1	GSE11611	Combined gene expression and QTL analysis of soybean quantitative resistance to Phytophthora sojae
43.8	99.9	GSM292916	89_C203.1L.SLL1U, Experimental replicate 1	GSE11611	Combined gene expression and QTL analysis of soybean quantitative resistance to Phytophthora sojae
41.6	99.9	GSM292172	28_1025.1A.R014L, Experimental replicate 1	GSE11611	Combined gene expression and QTL analysis of soybean quantitative resistance to Phytophthora sojae
41.2	99.9	GSM244920	5_VP9.I5L2.CEL, Experimental replicate 2	GSE9687	Expression patterns in time and space during P.sojae infection of soybean cultivars differing in quantitative resistance
39.5	99.9	GSM244916	4_SLO.I3U1.CEL, Experimental replicate 1	GSE9687	Expression patterns in time and space during P.sojae infection of soybean cultivars differing in quantitative resistance

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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF	Ev	BS	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.21	4e-39	163	PsAffx.C207000012_at	PsAffx.C207000012	-	-	3e-2	At5g61270	PIF7 (PHYTOCHROME-INTERACTING FACTOR7)	C.G.	S.X.	Please select
0.20	3e-27	123	PsAffx.C207000010_at	PsAffx.C207000010	-	-	9e+0	At3g17860	JAZ3 (JASMONATE-ZIM-DOMAIN PROTEIN 3)	C.G.	S.X.	Please select
0.06	1e-11	71	PsAffx.CL561Contig1_at	PsAffx.CL561Contig1	-	-	5e+0	At2g40230	transferase family protein	C.G.	S.X.	Please select
0.06	1e-11	71	PsAffx.C64000014_at	PsAffx.C64000014	-	-	5e+0	At3g24750	unknown protein	C.G.	S.X.	Please select
0.13	1e-11	71	PsAffx.C64000023_at	PsAffx.C64000023	-	-	5e-1	At5g15970	KIN2	C.G.	S.X.	Please select
0.08	1e-11	71	GmaAffx.39973.1.S1_s_at	BE584110	-	-	1e+1	At5g14500	aldose 1-epimerase family protein	C.G.	S.X.	Please select
0.02	4e-8	59	PsAffx.CL114Contig1_at	PsAffx.CL114Contig1	-	-	1e+0	At4g30400	zinc finger (C3HC4-type RING finger) family protein	C.G.	S.X.	Please select
0.21	4e-8	59	PsAffx.C85000037_at	PsAffx.C85000037	-	-	5e+0	At1g69588	CLE45 (CLAVATA3/ESR-RELATED 45)	C.G.	S.X.	Please select
0.08	2e-7	57	PsAffx.C64000001_at	PsAffx.C64000001	-	-	4e-1	At2g31370	bZIP transcription factor (POSF21)	C.G.	S.X.	Please select

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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF	Ev	BS	Species	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.03	6e+0	32	Arabidopsis thaliana	At3g43829	6240886	unknown protein	F:unknown;P:unknown;C:unknown	-	-	-	C.G.	S.X.	Please selectath TAIR (integral)ath,osa KEGG (integral)ath PlantTribes (integral)ath,osa Gramene (integral)ath MPSS (genome)ath InParanoid (ortholog)ath Plant RBP (ortholog)ath SIGnAL (T-DNA)ath RAFL (full-length clone)ath AtGDB (genome)ath Genevestigator (expression)ath,ptr eFP Browser (expression)ath AVT (expression)ath ATTED-II (co-expression)ath AtcisDB (cis-element)ath SUBA (hydropathy)ath AtProteomeath Plant Proteome Databaseath PMN (pathway)ath,osa KaPPA-View 4 (pathway)ath RnR (over-expression)ath iHOP (report)
0.03	8e-1	34	Hordeum vulgare	Contig14143_s_at	Contig14143	-	-	2e-2	At3g19900	unknown protein	C.G.	S.X.	Please select
0.04	2e-1	38	Oryza sativa	Os06g0144200	AK100191.1	-	Pectate lyase homolog (EC 4.2.2.2)	8e-1	At4g13710	pectate lyase family protein	C.G.	S.X.	Please selectath,osa KEGG (integral)ath,osa Gramene (integral)ath,osa KaPPA-View 4 (pathway)
0.03	2e+0	34	Populus trichocarpa	PtpAffx.214776.1.S1_at	pmrna28620	hypothetical protein	-	1e+1	At4g16980	arabinogalactan-protein family	C.G.	S.X.	Please selectath,ptr eFP Browser (expression)
0.03	2e+0	34	Triticum aestivum	TaAffx.31756.1.S1_at	CA608468	-	-	3e-1	At3g22100	basic helix-loop-helix (bHLH) family protein	C.G.	S.X.	Please select
0.02	2e+0	32	Vitis vinifera	1607839_at	CF373193	hypothetical protein LOC100253915	-	3e-10	At2g22680	zinc finger (C3HC4-type RING finger) family protein	C.G.	S.X.	Please select
0.02	3e+0	32	Zea mays	Zm.5362.1.A1_at	AW498436	hypothetical protein LOC100193109	-	1e-1	At1g79860	ROPGEF12 (RHO GUANYL-NUCLEOTIDE EXCHANGE FACTOR 12)	C.G.	S.X.	Please select

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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC	GO ID	Process Name

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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID	Link to Kappa-View	Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID	Link to KEGG PATHWAY	Pathway Name

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