Gene omics information

Query gene ID	PsAffx.C85000035_at
Gene name
Organism	Glycine max

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF	%ile	Gene/Probe ID	Repr.ID	Gene Name	Functional Description	Ev	AGI code	Arabidopsis gene name	S.X.	H.G.	Other DB
0.85	92.8	PsAffx.C85000035_at	PsAffx.C85000035	-	-	9e+0	At4g20006	unknown protein	S.X.	H.G.	Please select
0.66	84.0	PsAffx.C117000036_at	PsAffx.C117000036	-	-	2e+0	At2g33620	DNA-binding family protein / AT-hook protein 1 (AHP1)	S.X.	H.G.	Please select
0.64	83.4	PsAffx.C19000111_at	PsAffx.C19000111	-	-	1e+0	At4g38670	pathogenesis-related thaumatin family protein	S.X.	H.G.	Please select
0.64	83.4	PsAffx.C279000007_at	PsAffx.C279000007	-	-	3e+0	At5g21274	CAM6 (CALMODULIN 6)	S.X.	H.G.	Please select
0.54	74.8	PsAffx.C112000050_s_at	PsAffx.C112000050	-	-	2e-1	At5g54250	ATCNGC4 (CYCLIC NUCLEOTIDE-GATED CATION CHANNEL 4)	S.X.	H.G.	Please select
0.52	73.1	PsAffx.C1324000001_s_at	PsAffx.C1324000001	-	-	2e+0	At1g52230	PSAH2 (PHOTOSYSTEM I SUBUNIT H2)	S.X.	H.G.	Please select
0.51	72.3	PsAffx.C29000088_s_at	PsAffx.C29000088	-	-	7e-1	At4g16610	zinc finger (C2H2 type) family protein	S.X.	H.G.	Please select
0.46	65.5	PsAffx.CL982Contig1_at	PsAffx.CL982Contig1	-	-	2e+1	At5g06240	emb2735 (embryo defective 2735)	S.X.	H.G.	Please select
0.46	65.5	PsAffx.CL2001Contig1_at	PsAffx.CL2001Contig1	-	-	4e+0	At1g25250	AtIDD16 (Arabidopsis thaliana Indeterminate(ID)-Domain 16)	S.X.	H.G.	Please select
0.46	65.5	PsAffx.CL2324Contig1_at	PsAffx.CL2324Contig1	-	-	9e-1	At5g51650	unknown protein	S.X.	H.G.	Please select

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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.

Std2 GX	%ile	GSM ID	Assay Name	GSE ID	Experiment Title
29.7	99.8	GSM244778	10_CON.I2W2.CEL, Experimental replicate 2	GSE9687	Expression patterns in time and space during P.sojae infection of soybean cultivars differing in quantitative resistance
28.9	99.8	GSM293077	77_1077.1N.R046L, Experimental replicate 1	GSE11611	Combined gene expression and QTL analysis of soybean quantitative resistance to Phytophthora sojae
28.0	99.8	GSM292923	95_1465.1L.R283L, Experimental replicate 1	GSE11611	Combined gene expression and QTL analysis of soybean quantitative resistance to Phytophthora sojae
27.5	99.8	GSM293553	67_3017.2A.R9A3L, Experimental replicate 2	GSE11611	Combined gene expression and QTL analysis of soybean quantitative resistance to Phytophthora sojae
24.6	99.8	GSM293577	9_3009.2A.R9A2L, Experimental replicate 2	GSE11611	Combined gene expression and QTL analysis of soybean quantitative resistance to Phytophthora sojae
23.2	99.8	GSM293080	7_C033.1N.R9N3L, Experimental replicate 1	GSE11611	Combined gene expression and QTL analysis of soybean quantitative resistance to Phytophthora sojae
22.6	99.8	GSM293408	90_C079.1Q.R9Q2L, Experimental replicate 1	GSE11611	Combined gene expression and QTL analysis of soybean quantitative resistance to Phytophthora sojae
19.2	99.7	GSM293082	81_C019.1N.R9N1U, Experimental replicate 1	GSE11611	Combined gene expression and QTL analysis of soybean quantitative resistance to Phytophthora sojae
17.9	99.7	GSM293756	88_2113.2C.R285L, Experimental replicate 2	GSE11611	Combined gene expression and QTL analysis of soybean quantitative resistance to Phytophthora sojae
17.3	99.7	GSM294268	23_2428.2I.R297P, Experimental replicate 2	GSE11611	Combined gene expression and QTL analysis of soybean quantitative resistance to Phytophthora sojae

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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF	Ev	BS	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.11	7e-32	139	PsAffx.C189000008_at	PsAffx.C189000008	-	-	2e+0	At4g15700	glutaredoxin family protein	C.G.	S.X.	Please select
0.11	7e-32	139	PsAffx.C189000008_s_at	PsAffx.C189000008	-	-	2e+0	At4g15700	glutaredoxin family protein	C.G.	S.X.	Please select
0.20	4e-18	93	PsAffx.C246000020_at	PsAffx.C246000020	-	-	2e+0	At5g42785	unknown protein	C.G.	S.X.	Please select
0.19	2e-17	91	PsAffx.psZG007xB23f_s_at	PsAffx.psZG007xB23f	-	-	3e+0	At5g52760	heavy-metal-associated domain-containing protein	C.G.	S.X.	Please select
0.15	2e-17	91	PsAffx.C246000019_at	PsAffx.C246000019	-	-	8e+0	At3g17400	F-box family protein	C.G.	S.X.	Please select
0.17	5e-5	50	PsAffx.C246000011_at	PsAffx.C246000011	-	-	8e+0	At5g06360	ribosomal protein S8e family protein	C.G.	S.X.	Please select
0.08	2e-1	38	PsAffx.C246000018_at	PsAffx.C246000018	-	-	8e+0	At3g23171	unknown protein	C.G.	S.X.	Please select
0.01	8e-1	36	PsAffx.C33000096_at	PsAffx.C33000096	-	-	2e+0	At4g06479	nucleic acid binding / zinc ion binding	C.G.	S.X.	Please select
0.01	8e-1	36	PsAffx.C14000107_at	PsAffx.C14000107	-	-	1e+1	At5g61410	RPE	C.G.	S.X.	Please select

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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF	Ev	BS	Species	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.03	9e+0	32	Arabidopsis thaliana	At4g20006	6240456	unknown protein	F:unknown;P:unknown;C:mitochondrion	-	-	-	C.G.	S.X.	Please selectath TAIR (integral)ath,osa KEGG (integral)ath PlantTribes (integral)ath,osa Gramene (integral)ath MPSS (genome)ath InParanoid (ortholog)ath Plant RBP (ortholog)ath SIGnAL (T-DNA)ath RAFL (full-length clone)ath AtGDB (genome)ath Genevestigator (expression)ath,ptr eFP Browser (expression)ath AVT (expression)ath ATTED-II (co-expression)ath AtcisDB (cis-element)ath SUBA (hydropathy)ath AtProteomeath Plant Proteome Databaseath PMN (pathway)ath,osa KaPPA-View 4 (pathway)ath RnR (over-expression)ath iHOP (report)
0.02	1e+0	34	Hordeum vulgare	Contig1556_s_at	Contig1556	-	-	2e-20	At3g10950	60S ribosomal protein L37a (RPL37aB)	C.G.	S.X.	Please select
0.02	4e+0	34	Oryza sativa	Os.47714.1.A1_s_at	-	-	-	0			C.G.	S.X.	Please selectath,osa KEGG (integral)ath,osa Gramene (integral)ath,osa KaPPA-View 4 (pathway)
0.02	3e+0	34	Populus trichocarpa	PtpAffx.61196.1.S1_at	DN490935	hypothetical protein	-	3e+0	At5g35330	MBD02 (METHYL-CPG-BINDING DOMAIN PROTEIN 02)	C.G.	S.X.	Please selectath,ptr eFP Browser (expression)
0.03	2e+0	34	Triticum aestivum	TaAffx.7614.5.S1_at	CA655681	-	-	1e+1	At5g38220	hydrolase	C.G.	S.X.	Please select
0.02	3e+0	32	Vitis vinifera	1615530_s_at	CF201449.1	hypothetical protein LOC100256412	-	6e-9	At2g39960	microsomal signal peptidase 25 kDa subunit, putative (SPC25)	C.G.	S.X.	Please select
0.02	9e-1	34	Zea mays	Zm.16531.2.A1_at	BG841648	hypothetical protein LOC100273317	-	2e-12	At5g35680	eukaryotic translation initiation factor 1A, putative / eIF-1A, putative / eIF-4C, putative	C.G.	S.X.	Please select

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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC	GO ID	Process Name

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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID	Link to Kappa-View	Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID	Link to KEGG PATHWAY	Pathway Name

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