Gene omics information

Query gene ID	PsAffx.C84000055_at
Gene name
Organism	Glycine max

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF	%ile	Gene/Probe ID	Repr.ID	Gene Name	Functional Description	Ev	AGI code	Arabidopsis gene name	S.X.	H.G.	Other DB
0.67	86.1	PsAffx.C84000055_at	PsAffx.C84000055	-	-	8e-1	At1g16230	syntaxin-related family protein	S.X.	H.G.	Please select
0.86	93.0	PsAffx.C338000008_at	PsAffx.C338000008	-	-	3e+0	At5g58540	protein kinase family protein	S.X.	H.G.	Please select
0.86	93.0	PsAffx.C22000090_at	PsAffx.C22000090	-	-	3e-2	At5g55690	MADS-box protein (AGL47)	S.X.	H.G.	Please select
0.84	92.6	PsAffx.psMA013xP16f_at	PsAffx.psMA013xP16f	-	-	3e-1	At2g30560	glycine-rich protein	S.X.	H.G.	Please select
0.83	92.5	PsAffx.C61000020_at	PsAffx.C61000020	-	-	9e-1	At5g19030	RNA recognition motif (RRM)-containing protein	S.X.	H.G.	Please select
0.80	91.5	PsAffx.CL1586Contig1_at	PsAffx.CL1586Contig1	-	-	6e+0	At4g03950	glucose-6-phosphate/phosphate translocator, putative	S.X.	H.G.	Please select
0.71	87.8	PsAffx.C18000094_s_at	PsAffx.C18000094	-	-	3e+0	At4g02715	unknown protein	S.X.	H.G.	Please select
0.67	86.1	PsAffx.C57000058_at	PsAffx.C57000058	-	-	5e-1	At3g60270	uclacyanin, putative	S.X.	H.G.	Please select
0.67	86.1	PsAffx.CL1570Contig1_at	PsAffx.CL1570Contig1	-	-	5e-1	At3g24830	60S ribosomal protein L13A (RPL13aB)	S.X.	H.G.	Please select
0.63	82.9	PsAffx.C417000001_at	PsAffx.C417000001	-	-	3e-1	At1g55130	endomembrane protein 70, putative	S.X.	H.G.	Please select

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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.

Std2 GX	%ile	GSM ID	Assay Name	GSE ID	Experiment Title
36.3	99.9	GSM294303	54_3153.2I.R9I2L, Experimental replicate 2	GSE11611	Combined gene expression and QTL analysis of soybean quantitative resistance to Phytophthora sojae
18.7	99.7	GSM244920	5_VP9.I5L2.CEL, Experimental replicate 2	GSE9687	Expression patterns in time and space during P.sojae infection of soybean cultivars differing in quantitative resistance
17.0	99.7	GSM294262	20_2405.2I.R084L, Experimental replicate 2	GSE11611	Combined gene expression and QTL analysis of soybean quantitative resistance to Phytophthora sojae
16.7	99.7	GSM308556	Mature Soybean (Glycine max) pollen grains replicate 1	GSE12286	Genomic Expression Profiling of Mature Soybean (Glycine max) Pollen
16.5	99.6	GSM171703	4_W.E.I.5, Experimental replicate W	GSE7124	Plant and pathogen gene expression during infection by P.sojae of 8 soybean cultivars varying in quantitative resistance
15.1	99.6	GSM294225	75_2365.2H.R095L, Experimental replicate 2	GSE11611	Combined gene expression and QTL analysis of soybean quantitative resistance to Phytophthora sojae
13.4	99.5	GSM171608	12_Y.E.I.3, Experimental replicate Y	GSE7124	Plant and pathogen gene expression during infection by P.sojae of 8 soybean cultivars varying in quantitative resistance
13.3	99.5	GSM293015	20_1089.1N.R055L, Experimental replicate 1	GSE11611	Combined gene expression and QTL analysis of soybean quantitative resistance to Phytophthora sojae
12.8	99.5	GSM294092	4_3111.2G.R9G1L, Experimental replicate 2	GSE11611	Combined gene expression and QTL analysis of soybean quantitative resistance to Phytophthora sojae
11.1	99.4	GSM293194	76_1133.1O.R084L, Experimental replicate 1	GSE11611	Combined gene expression and QTL analysis of soybean quantitative resistance to Phytophthora sojae

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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF	Ev	BS	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.80	0	1215	PsAffx.C84000046_at	PsAffx.C84000046	-	-	9e-1	At2g03470	myb family transcription factor / ELM2 domain-containing protein	C.G.	S.X.	Please select
0.36	0	684	PsAffx.psHA010iE04r_s_at	PsAffx.psHA010iE04r	-	-	4e+0	At3g42560	unknown protein	C.G.	S.X.	Please select
0.76	0	670	PsAffx.C84000045_s_at	PsAffx.C84000045	-	-	8e-1	At2g04066	MATE efflux protein-related	C.G.	S.X.	Please select
0.23	7e-36	153	PsAffx.CL1432Contig1_at	PsAffx.CL1432Contig1	-	-	2e+0	At5g53220	unknown protein	C.G.	S.X.	Please select
0.15	4e-19	97	PsAffx.C47000091_at	PsAffx.C47000091	-	-	6e-2	At1g66800	cinnamyl-alcohol dehydrogenase family / CAD family	C.G.	S.X.	Please select
0.03	2e-5	52	PsAffx.C10000017_at	PsAffx.C10000017	-	-	4e-1	At5g64910	unknown protein	C.G.	S.X.	Please select
0.01	7e-2	40	PsAffx.C56000015_at	PsAffx.C56000015	-	-	5e-1	At2g05350	unknown protein	C.G.	S.X.	Please select
0.02	7e-2	40	PsAffx.C125000007_at	PsAffx.C125000007	-	-	6e-1	At4g32720	AtLa1 (Arabidopsis thaliana La protein 1)	C.G.	S.X.	Please select
0.02	3e-1	38	PsAffx.C271000002_at	PsAffx.C271000002	-	-	4e-1	At5g01590	unknown protein	C.G.	S.X.	Please select

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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF	Ev	BS	Species	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.02	8e-1	36	Arabidopsis thaliana	At1g16230	838192	syntaxin-related family protein	F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PFMOB	-	-	-	C.G.	S.X.	Please selectath TAIR (integral)ath,osa KEGG (integral)ath PlantTribes (integral)ath,osa Gramene (integral)ath MPSS (genome)ath InParanoid (ortholog)ath Plant RBP (ortholog)ath SIGnAL (T-DNA)ath RAFL (full-length clone)ath AtGDB (genome)ath Genevestigator (expression)ath,ptr eFP Browser (expression)ath AVT (expression)ath ATTED-II (co-expression)ath AtcisDB (cis-element)ath SUBA (hydropathy)ath AtProteomeath Plant Proteome Databaseath PMN (pathway)ath,osa KaPPA-View 4 (pathway)ath RnR (over-expression)ath iHOP (report)
0.02	3e-2	40	Hordeum vulgare	HM12H05r_at	HM12H05r	-	-	1e+0	At5g62950	catalytic/ nucleotide binding	C.G.	S.X.	Please select
0.02	4e-1	38	Oryza sativa	OsAffx.13385.1.S1_at	-	-	-	0			C.G.	S.X.	Please selectath,osa KEGG (integral)ath,osa Gramene (integral)ath,osa KaPPA-View 4 (pathway)
0.02	1e-3	46	Populus trichocarpa	PtpAffx.207351.1.S1_at	pmrna14589	-	-	1e+1	At5g51940	NRPB6A	C.G.	S.X.	Please selectath,ptr eFP Browser (expression)
0.02	2e-1	38	Triticum aestivum	TaAffx.32265.1.S1_at	CA597903	-	-	8e-1	At1g12340	-	C.G.	S.X.	Please select
0.02	6e-2	38	Vitis vinifera	1620932_at	CA817618	hypothetical protein LOC100259549	-	8e-28	At5g26980	SYP41 (SYNTAXIN OF PLANTS 41)	C.G.	S.X.	Please select
0.02	4e-1	36	Zea mays	Zm.15320.1.S1_at	CF005085	hypothetical protein LOC100276621	-	1e+0	At2g30350	endo/excinuclease amino terminal domain-containing protein	C.G.	S.X.	Please select

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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC	GO ID	Process Name

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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID	Link to Kappa-View	Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID	Link to KEGG PATHWAY	Pathway Name

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