Gene omics information

Query gene ID	PsAffx.C83000002_at
Gene name
Organism	Glycine max

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF	%ile	Gene/Probe ID	Repr.ID	Gene Name	Functional Description	Ev	AGI code	Arabidopsis gene name	S.X.	H.G.	Other DB
0.40	57.1	PsAffx.C83000002_at	PsAffx.C83000002	-	-	9e-1	At3g28980	unknown protein	S.X.	H.G.	Please select
0.56	78.2	PsAffx.psZG005xN22f_s_at	PsAffx.psZG005xN22f	-	-	9e+0	At5g14602	unknown protein	S.X.	H.G.	Please select
0.43	60.6	PsAffx.C86000041_at	PsAffx.C86000041	-	-	2e-1	At1g31330	PSAF (photosystem I subunit F)	S.X.	H.G.	Please select
0.29	39.0	PsAffx.C11000025_at	PsAffx.C11000025	-	-	5e-4	At4g32551	LUG (LEUNIG)	S.X.	H.G.	Please select
0.19	23.7	PsAffx.C201000027_at	PsAffx.C201000027	-	-	3e+0	At3g20390	endoribonuclease L-PSP family protein	S.X.	H.G.	Please select
0.17	21.2	PsAffx.psHA010iH10r_s_at	PsAffx.psHA010iH10r	-	-	1e+1	At5g30341	unknown protein	S.X.	H.G.	Please select
0.16	19.7	PsAffx.C192000031_at	PsAffx.C192000031	-	-	2e+0	At4g22420	-	S.X.	H.G.	Please select
0.14	17.5	GmaAffx.89500.1.A1_at	CK605776	-	-	1e+1	At5g48860	unknown protein	S.X.	H.G.	Please select

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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.

Std2 GX	%ile	GSM ID	Assay Name	GSE ID	Experiment Title
111.6	100.0	GSM292923	95_1465.1L.R283L, Experimental replicate 1	GSE11611	Combined gene expression and QTL analysis of soybean quantitative resistance to Phytophthora sojae
56.8	99.9	GSM294268	23_2428.2I.R297P, Experimental replicate 2	GSE11611	Combined gene expression and QTL analysis of soybean quantitative resistance to Phytophthora sojae
30.9	99.9	GSM293641	68_2065.2B.R129U, Experimental replicate 2	GSE11611	Combined gene expression and QTL analysis of soybean quantitative resistance to Phytophthora sojae
23.9	99.8	GSM292229	25_C029.1B.R9B2L, Experimental replicate 1	GSE11611	Combined gene expression and QTL analysis of soybean quantitative resistance to Phytophthora sojae
18.7	99.7	GSM292838	18_C211.1L.SLL3L, Experimental replicate 1	GSE11611	Combined gene expression and QTL analysis of soybean quantitative resistance to Phytophthora sojae
15.5	99.6	GSM292448	49_C110.1G.V7G1P, Experimental replicate 1	GSE11611	Combined gene expression and QTL analysis of soybean quantitative resistance to Phytophthora sojae
14.7	99.6	GSM293082	81_C019.1N.R9N1U, Experimental replicate 1	GSE11611	Combined gene expression and QTL analysis of soybean quantitative resistance to Phytophthora sojae
11.7	99.4	GSM308556	Mature Soybean (Glycine max) pollen grains replicate 1	GSE12286	Genomic Expression Profiling of Mature Soybean (Glycine max) Pollen
11.4	99.4	GSM244814	19_SLO.M5W2.CEL, Experimental replicate 2	GSE9687	Expression patterns in time and space during P.sojae infection of soybean cultivars differing in quantitative resistance
9.0	99.2	GSM293195	77_1130.1O.R082P, Experimental replicate 1	GSE11611	Combined gene expression and QTL analysis of soybean quantitative resistance to Phytophthora sojae

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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF	Ev	BS	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.44	0	636	PsAffx.C42000077_at	PsAffx.C42000077	-	-	3e-1	At1g19350	BES1 (BRI1-EMS-SUPPRESSOR 1)	C.G.	S.X.	Please select
0.46	1e-117	424	PsAffx.C453000002_at	PsAffx.C453000002	-	-	5e-1	Atmg01270	-	C.G.	S.X.	Please select
0.21	2e-52	208	PsAffx.C312000009_at	PsAffx.C312000009	-	-	7e+0	At5g28919	-	C.G.	S.X.	Please select
0.10	1e-31	139	PsAffx.C89000049_at	PsAffx.C89000049	-	-	2e+0	At5g01015	unknown protein	C.G.	S.X.	Please select
0.03	3e-7	57	PsAffx.C298000007_at	PsAffx.C298000007	-	-	3e+0	At3g13120	30S ribosomal protein S10, chloroplast, putative	C.G.	S.X.	Please select
0.09	2e-2	42	PsAffx.C30000055_at	PsAffx.C30000055	-	-	5e-1	At5g21140	emb1379 (embryo defective 1379)	C.G.	S.X.	Please select
0.02	3e-1	38	PsAffx.psMA011xC03f_at	PsAffx.psMA011xC03f	-	-	4e+0	At2g07669	unknown protein	C.G.	S.X.	Please select
0.01	3e-1	38	PsAffx.C21000104_at	PsAffx.C21000104	-	-	8e-2	At5g27690	heavy-metal-associated domain-containing protein	C.G.	S.X.	Please select
0.01	3e-1	38	PsAffx.C216000018_at	PsAffx.C216000018	-	-	1e-2	At3g08730	PK1 (PROTEIN-SERINE KINASE 1)	C.G.	S.X.	Please select

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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF	Ev	BS	Species	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.01	9e-1	36	Arabidopsis thaliana	At3g28980	822538	unknown protein	F:molecular_function unknown;P:biological_process unknown;C:endomembrane system;OBMFPVA	-	-	-	C.G.	S.X.	Please selectath TAIR (integral)ath,osa KEGG (integral)ath PlantTribes (integral)ath,osa Gramene (integral)ath MPSS (genome)ath InParanoid (ortholog)ath Plant RBP (ortholog)ath SIGnAL (T-DNA)ath RAFL (full-length clone)ath AtGDB (genome)ath Genevestigator (expression)ath,ptr eFP Browser (expression)ath AVT (expression)ath ATTED-II (co-expression)ath AtcisDB (cis-element)ath SUBA (hydropathy)ath AtProteomeath Plant Proteome Databaseath PMN (pathway)ath,osa KaPPA-View 4 (pathway)ath RnR (over-expression)ath iHOP (report)
0.01	2e+0	34	Hordeum vulgare	Contig24446_at	Contig24446	-	-	2e+1	At5g22440	60S ribosomal protein L10A (RPL10aC)	C.G.	S.X.	Please select
0.01	3e-2	42	Oryza sativa	Os01g0945300	AK065371.1	-	Amino acid/polyamine transporter I family protein	7e-17	At2g01170	BAT1 (BIDIRECTIONAL AMINO ACID TRANSPORTER 1)	C.G.	S.X.	Please selectath,osa KEGG (integral)ath,osa Gramene (integral)ath,osa KaPPA-View 4 (pathway)
0.01	5e+0	34	Populus trichocarpa	PtpAffx.203306.1.S1_at	pmrna6556	-	-	7e-9	At5g45430	protein kinase, putative	C.G.	S.X.	Please selectath,ptr eFP Browser (expression)
0.02	1e+0	36	Triticum aestivum	Ta.20198.1.S1_at	CA674820	-	-	7e-1	At1g61820	BGLU46 (BETA GLUCOSIDASE 46)	C.G.	S.X.	Please select
0.01	3e-1	36	Vitis vinifera	1614115_at	CF207341	hypothetical protein LOC100259785	-	1e+0	At4g25790	allergen V5/Tpx-1-related family protein	C.G.	S.X.	Please select
0.01	2e+0	34	Zea mays	Zm.5225.1.A1_at	AI615012	hypothetical protein LOC100273591	-	4e-2	At5g48740	leucine-rich repeat family protein / protein kinase family protein	C.G.	S.X.	Please select

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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC	GO ID	Process Name

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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID	Link to Kappa-View	Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID	Link to KEGG PATHWAY	Pathway Name

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