Gene omics information

Query gene ID	PsAffx.C8000052_at
Gene name
Organism	Glycine max

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF	%ile	Gene/Probe ID	Repr.ID	Gene Name	Functional Description	Ev	AGI code	Arabidopsis gene name	S.X.	H.G.	Other DB
0.43	60.6	PsAffx.C8000052_at	PsAffx.C8000052	-	-	4e-1	At2g15280	reticulon family protein (RTNLB10)	S.X.	H.G.	Please select
0.46	65.5	PsAffx.C145000027_at	PsAffx.C145000027	-	-	1e+0	At3g28220	meprin and TRAF homology domain-containing protein / MATH domain-containing protein	S.X.	H.G.	Please select
0.43	60.6	PsAffx.psMA013xH08f_at	PsAffx.psMA013xH08f	-	-	4e+0	At5g54095	unknown protein	S.X.	H.G.	Please select
0.22	28.1	PsAffx.C242000008_at	PsAffx.C242000008	-	-	3e+0	At5g36900	unknown protein	S.X.	H.G.	Please select
0.21	26.6	PsAffx.C45000036_at	PsAffx.C45000036	-	-	7e-1	At1g20930	CDKB2	S.X.	H.G.	Please select
0.07	10.2	PsAffx.C190000010_at	PsAffx.C190000010	-	-	3e+0	At2g18010	auxin-responsive family protein	S.X.	H.G.	Please select

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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.

Std2 GX	%ile	GSM ID	Assay Name	GSE ID	Experiment Title
174.5	100.0	GSM293641	68_2065.2B.R129U, Experimental replicate 2	GSE11611	Combined gene expression and QTL analysis of soybean quantitative resistance to Phytophthora sojae
154.7	100.0	GSM292923	95_1465.1L.R283L, Experimental replicate 1	GSE11611	Combined gene expression and QTL analysis of soybean quantitative resistance to Phytophthora sojae
114.2	100.0	GSM238049	Soybean-Mandarin-4-RMA	GSE9374	Exploration of microarrays as tools to assess substantial equivalence of genetically modified soybeans
67.0	100.0	GSM292448	49_C110.1G.V7G1P, Experimental replicate 1	GSE11611	Combined gene expression and QTL analysis of soybean quantitative resistance to Phytophthora sojae
63.5	99.9	GSM238031	Soybean-2601R-3-RMA	GSE9374	Exploration of microarrays as tools to assess substantial equivalence of genetically modified soybeans
54.6	99.9	GSM294268	23_2428.2I.R297P, Experimental replicate 2	GSE11611	Combined gene expression and QTL analysis of soybean quantitative resistance to Phytophthora sojae
36.7	99.9	GSM293082	81_C019.1N.R9N1U, Experimental replicate 1	GSE11611	Combined gene expression and QTL analysis of soybean quantitative resistance to Phytophthora sojae
33.7	99.9	GSM292838	18_C211.1L.SLL3L, Experimental replicate 1	GSE11611	Combined gene expression and QTL analysis of soybean quantitative resistance to Phytophthora sojae
22.5	99.8	GSM292169	24_1018.1A.R010P, Experimental replicate 1	GSE11611	Combined gene expression and QTL analysis of soybean quantitative resistance to Phytophthora sojae
18.6	99.7	GSM244813	18_VP9.I5U4.CEL, Experimental replicate 4	GSE9687	Expression patterns in time and space during P.sojae infection of soybean cultivars differing in quantitative resistance

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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF	Ev	BS	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.01	1e-1	40	PsAffx.C77000017_at	PsAffx.C77000017	-	-	3e-1	At3g63400	peptidyl-prolyl cis-trans isomerase cyclophilin-type family protein	C.G.	S.X.	Please select
0.01	1e-1	40	PsAffx.C47000013_at	PsAffx.C47000013	-	-	3e+0	At1g51510	Y14	C.G.	S.X.	Please select
0.01	6e-1	38	PsAffx.C2000211_at	PsAffx.C2000211	-	-	1e-1	At1g29460	auxin-responsive protein, putative	C.G.	S.X.	Please select
0.01	6e-1	38	PsAffx.C2000123_at	PsAffx.C2000123	-	-	2e-6	At1g08340	rac GTPase activating protein, putative	C.G.	S.X.	Please select
0.01	6e-1	38	PsAffx.C11000067_at	PsAffx.C11000067	-	-	5e-1	At4g19100	unknown protein	C.G.	S.X.	Please select
0.01	6e-1	38	PsAffx.C110000025_at	PsAffx.C110000025	-	-	4e+0	At3g23860	GTP-binding protein-related	C.G.	S.X.	Please select
0.01	2e+0	36	PsAffx.CL519Contig1_at	PsAffx.CL519Contig1	-	-	3e+0	At2g38530	LTP2 (LIPID TRANSFER PROTEIN 2)	C.G.	S.X.	Please select
0.00	2e+0	36	PsAffx.C81000013_at	PsAffx.C81000013	-	-	3e-3	At1g20920	DEAD box RNA helicase, putative	C.G.	S.X.	Please select
0.01	2e+0	36	PsAffx.C69000099_at	PsAffx.C69000099	-	-	6e+0	At5g03310	auxin-responsive family protein	C.G.	S.X.	Please select

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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF	Ev	BS	Species	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.01	4e-1	38	Arabidopsis thaliana	At2g15280	816017	reticulon family protein (RTNLB10)	F:molecular_function unknown;P:biological_process unknown;C:endoplasmic reticulum;MPOF	-	-	-	C.G.	S.X.	Please selectath TAIR (integral)ath,osa KEGG (integral)ath PlantTribes (integral)ath,osa Gramene (integral)ath MPSS (genome)ath InParanoid (ortholog)ath Plant RBP (ortholog)ath SIGnAL (T-DNA)ath RAFL (full-length clone)ath AtGDB (genome)ath Genevestigator (expression)ath,ptr eFP Browser (expression)ath AVT (expression)ath ATTED-II (co-expression)ath AtcisDB (cis-element)ath SUBA (hydropathy)ath AtProteomeath Plant Proteome Databaseath PMN (pathway)ath,osa KaPPA-View 4 (pathway)ath RnR (over-expression)ath iHOP (report)
0.01	8e-1	36	Hordeum vulgare	HD12G10r_at	HD12G10r	-	-	9e-1	At3g59450	calcium-binding EF hand family protein	C.G.	S.X.	Please select
0.01	8e-1	38	Oryza sativa	Os01g0942100	NM_189724.1	-	-	7e+0	At2g18160	ATBZIP2 (ARABIDOPSIS THALIANA BASIC LEUCINE-ZIPPER 2)	C.G.	S.X.	Please selectath,osa KEGG (integral)ath,osa Gramene (integral)ath,osa KaPPA-View 4 (pathway)
0.01	1e-1	40	Populus trichocarpa	PtpAffx.217899.1.S1_at	pmrna33347	hypothetical protein	-	3e+1	At5g45350	proline-rich family protein	C.G.	S.X.	Please selectath,ptr eFP Browser (expression)
0.01	4e-1	38	Triticum aestivum	TaAffx.35349.1.S1_at	BQ609082	-	-	4e+0	At3g42155	catalytic/ hydrolase, hydrolyzing O-glycosyl compounds	C.G.	S.X.	Please select
0.01	1e-1	38	Vitis vinifera	1619131_at	CB973000	-	-	1e+0	At4g03070	AOP1	C.G.	S.X.	Please select
0.01	2e-1	38	Zea mays	Zm.3568.2.A1_a_at	CF629788	ATFP4	-	2e+0	At5g50760	auxin-responsive family protein	C.G.	S.X.	Please select

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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC	GO ID	Process Name

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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID	Link to Kappa-View	Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID	Link to KEGG PATHWAY	Pathway Name

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