Gene omics information

Query gene ID	PsAffx.C70000043_at
Gene name
Organism	Glycine max

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF	%ile	Gene/Probe ID	Repr.ID	Gene Name	Functional Description	Ev	AGI code	Arabidopsis gene name	S.X.	H.G.	Other DB
0.86	93.0	PsAffx.C70000043_at	PsAffx.C70000043	-	-	9e-1	At2g19045	RALFL13 (RALF-LIKE 13)	S.X.	H.G.	Please select
0.75	89.5	PsAffx.CL72Contig3_at	PsAffx.CL72Contig3	-	-	2e+0	At4g30480	tetratricopeptide repeat (TPR)-containing protein	S.X.	H.G.	Please select
0.74	89.2	PsAffx.C191000027_at	PsAffx.C191000027	-	-	7e-1	At2g20420	succinyl-CoA ligase (GDP-forming) beta-chain, mitochondrial, putative / succinyl-CoA synthetase, beta chain, putative / SCS-beta, putative	S.X.	H.G.	Please select
0.72	88.1	PsAffx.CL89Contig1_at	PsAffx.CL89Contig1	-	-	2e-1	At1g59900	AT-E1 ALPHA	S.X.	H.G.	Please select
0.68	86.4	PsAffx.CL377Contig1_at	PsAffx.CL377Contig1	-	-	8e+0	At5g58640	selenoprotein-related	S.X.	H.G.	Please select
0.62	82.1	PsAffx.CL72Contig2_at	PsAffx.CL72Contig2	-	-	3e-1	At2g25190	unknown protein	S.X.	H.G.	Please select
0.61	81.8	PsAffx.CL584Contig1_s_at	PsAffx.CL584Contig1	-	-	4e+0	At4g36500	unknown protein	S.X.	H.G.	Please select
0.61	81.8	PsAffx.CL82Contig1_at	PsAffx.CL82Contig1	-	-	4e-32	At2g47170	ARF1A1C	S.X.	H.G.	Please select
0.60	80.7	PsAffx.CL122Contig1_at	PsAffx.CL122Contig1	-	-	1e-1	At3g56350	superoxide dismutase (Mn), putative / manganese superoxide dismutase, putative	S.X.	H.G.	Please select
0.59	79.5	PsAffx.CL243Contig1_at	PsAffx.CL243Contig1	-	-	4e-3	At5g08530	CI51 (51 kDa subunit of complex I)	S.X.	H.G.	Please select

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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.

Std2 GX	%ile	GSM ID	Assay Name	GSE ID	Experiment Title
45.5	99.9	GSM293082	81_C019.1N.R9N1U, Experimental replicate 1	GSE11611	Combined gene expression and QTL analysis of soybean quantitative resistance to Phytophthora sojae
29.8	99.8	GSM244890	36_SLO.I2W2.CEL, Experimental replicate 2	GSE9687	Expression patterns in time and space during P.sojae infection of soybean cultivars differing in quantitative resistance
28.7	99.8	GSM293077	77_1077.1N.R046L, Experimental replicate 1	GSE11611	Combined gene expression and QTL analysis of soybean quantitative resistance to Phytophthora sojae
26.8	99.8	GSM292838	18_C211.1L.SLL3L, Experimental replicate 1	GSE11611	Combined gene expression and QTL analysis of soybean quantitative resistance to Phytophthora sojae
24.2	99.8	GSM171703	4_W.E.I.5, Experimental replicate W	GSE7124	Plant and pathogen gene expression during infection by P.sojae of 8 soybean cultivars varying in quantitative resistance
22.1	99.8	GSM293226	15_C065.1P.R9P2L, Experimental replicate 1	GSE11611	Combined gene expression and QTL analysis of soybean quantitative resistance to Phytophthora sojae
21.5	99.8	GSM293080	7_C033.1N.R9N3L, Experimental replicate 1	GSE11611	Combined gene expression and QTL analysis of soybean quantitative resistance to Phytophthora sojae
19.4	99.7	GSM293294	77_C067.1P.R9P3L, Experimental replicate 1	GSE11611	Combined gene expression and QTL analysis of soybean quantitative resistance to Phytophthora sojae
19.2	99.7	GSM171611	13_W.E.M.5, Experimental replicate W	GSE7124	Plant and pathogen gene expression during infection by P.sojae of 8 soybean cultivars varying in quantitative resistance
18.2	99.7	GSM294262	20_2405.2I.R084L, Experimental replicate 2	GSE11611	Combined gene expression and QTL analysis of soybean quantitative resistance to Phytophthora sojae

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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF	Ev	BS	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.02	8e-2	38	PsAffx.C48000004_at	PsAffx.C48000004	-	-	7e-1	At3g12500	ATHCHIB (ARABIDOPSIS THALIANA BASIC CHITINASE)	C.G.	S.X.	Please select
0.04	3e-1	36	PsAffx.CL506Contig1_at	PsAffx.CL506Contig1	-	-	4e-4	At5g66140	PAD2 (PROTEASOME ALPHA SUBUNIT D 2)	C.G.	S.X.	Please select
0.03	3e-1	36	PsAffx.C59000048_at	PsAffx.C59000048	-	-	1e-1	At3g47120	RNA recognition motif (RRM)-containing protein	C.G.	S.X.	Please select
0.01	3e-1	36	PsAffx.C37000066_at	PsAffx.C37000066	-	-	1e+0	At3g62080	SNF7 family protein	C.G.	S.X.	Please select
0.02	3e-1	36	PsAffx.C157000034_s_at	PsAffx.C157000034	-	-	3e+0	At2g27390	proline-rich family protein	C.G.	S.X.	Please select
0.01	3e-1	36	PsAffx.C152000004_at	PsAffx.C152000004	-	-	1e+0	At5g54470	zinc finger (B-box type) family protein	C.G.	S.X.	Please select
0.01	3e-1	36	PsAffx.C134000004_at	PsAffx.C134000004	-	-	4e-1	At4g09180	basic helix-loop-helix (bHLH) family protein	C.G.	S.X.	Please select
0.04	3e-1	36	GmaAffx.10115.1.S1_at	BQ081312	-	-	8e-1	At1g32600	F-box family protein-related	C.G.	S.X.	Please select
0.03	1e+0	34	PsAffx.psML010xA22f_s_at	PsAffx.psML010xA22f	-	-	1e+0	At3g53235	unknown protein	C.G.	S.X.	Please select

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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF	Ev	BS	Species	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.05	9e-1	34	Arabidopsis thaliana	At2g19045	5007885	RALFL13 (RALF-LIKE 13)	Member of a diversely expressed predicted peptide family showing sequence similarity to tobacco Rapid Alkalinization Factor (RALF), and is believed to play an essential role in the physiology of Arabidopsis. Consists of a single exon and is characterized by a conserved C-terminal motif and N-terminal signal peptide.	-	-	-	C.G.	S.X.	Please selectath TAIR (integral)ath,osa KEGG (integral)ath PlantTribes (integral)ath,osa Gramene (integral)ath MPSS (genome)ath InParanoid (ortholog)ath Plant RBP (ortholog)ath SIGnAL (T-DNA)ath RAFL (full-length clone)ath AtGDB (genome)ath Genevestigator (expression)ath,ptr eFP Browser (expression)ath AVT (expression)ath ATTED-II (co-expression)ath AtcisDB (cis-element)ath SUBA (hydropathy)ath AtProteomeath Plant Proteome Databaseath PMN (pathway)ath,osa KaPPA-View 4 (pathway)ath RnR (over-expression)ath iHOP (report)
0.03	7e-3	40	Hordeum vulgare	Contig3886_at	Contig3886	-	-	3e-2	At2g27510	ATFD3 (ferredoxin 3)	C.G.	S.X.	Please select
0.04	3e-2	40	Oryza sativa	Os07g0286200	NM_185307.1	-	-	8e-1	At3g63095	-	C.G.	S.X.	Please selectath,osa KEGG (integral)ath,osa Gramene (integral)ath,osa KaPPA-View 4 (pathway)
0.04	5e-3	42	Populus trichocarpa	PtpAffx.220159.1.S1_at	pmrna36513	hypothetical protein	-	4e+0	At3g18280	protease inhibitor/seed storage/lipid transfer protein (LTP) family protein	C.G.	S.X.	Please selectath,ptr eFP Browser (expression)
0.04	2e-1	36	Triticum aestivum	Ta.5490.3.S1_at	CA684972	-	-	4e+0	At2g36030	unknown protein	C.G.	S.X.	Please select
0.03	4e+0	30	Vitis vinifera	1621189_at	BQ793238	-	-	2e-5	At5g07120	SNX2b (SORTING NEXIN 2b)	C.G.	S.X.	Please select
0.03	4e-1	34	Zea mays	Zm.872.2.S1_at	BU097971	-	-	2e-15	At1g77610	glucose-6-phosphate/phosphate translocator-related	C.G.	S.X.	Please select

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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC	GO ID	Process Name

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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID	Link to Kappa-View	Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID	Link to KEGG PATHWAY	Pathway Name

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