Gene omics information

Query gene ID	PsAffx.C68000072_at
Gene name
Organism	Glycine max

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF	%ile	Gene/Probe ID	Repr.ID	Gene Name	Functional Description	Ev	AGI code	Arabidopsis gene name	S.X.	H.G.	Other DB
0.91	98.6	PsAffx.C68000072_at	PsAffx.C68000072	-	-	4e+0	At2g41410	calmodulin, putative	S.X.	H.G.	Please select
0.80	91.5	HgAffx.5776.1.S1_at	CB826435	-	-	1e+0	At5g59030	COPT1 (copper transporter 1)	S.X.	H.G.	Please select
0.67	86.1	PsAffx.C47000085_at	PsAffx.C47000085	-	-	2e+0	At1g04350	2-oxoglutarate-dependent dioxygenase, putative	S.X.	H.G.	Please select
0.67	86.1	PsAffx.C154000024_at	PsAffx.C154000024	-	-	2e-1	At5g62160	AtZIP12 (ZINC TRANSPORTER 12 PRECURSOR)	S.X.	H.G.	Please select
0.67	86.1	HgAffx.24315.1.S1_at	CB374815	-	-	9e-1	At4g15930	microtubule motor	S.X.	H.G.	Please select
0.53	74.2	PsAffx.C6000193_at	PsAffx.C6000193	-	-	1e+1	Atmg00450	-	S.X.	H.G.	Please select

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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.

Std2 GX	%ile	GSM ID	Assay Name	GSE ID	Experiment Title
1601.7	100.0	GSM292923	95_1465.1L.R283L, Experimental replicate 1	GSE11611	Combined gene expression and QTL analysis of soybean quantitative resistance to Phytophthora sojae
113.0	100.0	GSM293102	18_1103.1O.R065L, Experimental replicate 1	GSE11611	Combined gene expression and QTL analysis of soybean quantitative resistance to Phytophthora sojae
42.9	99.9	GSM293641	68_2065.2B.R129U, Experimental replicate 2	GSE11611	Combined gene expression and QTL analysis of soybean quantitative resistance to Phytophthora sojae
41.5	99.9	GSM171668	26_Y.L.I.5, Experimental replicate Y	GSE7124	Plant and pathogen gene expression during infection by P.sojae of 8 soybean cultivars varying in quantitative resistance
33.2	99.9	GSM292861	39_C208.1L.V7L2P, Experimental replicate 1	GSE11611	Combined gene expression and QTL analysis of soybean quantitative resistance to Phytophthora sojae
25.1	99.8	GSM244874	32_CON.I2W4.CEL, Experimental replicate 4	GSE9687	Expression patterns in time and space during P.sojae infection of soybean cultivars differing in quantitative resistance
24.0	99.8	GSM294150	15_3131.2H.R9H1L, Experimental replicate 2	GSE11611	Combined gene expression and QTL analysis of soybean quantitative resistance to Phytophthora sojae
22.9	99.8	GSM292901	75_1457.1L.R279U, Experimental replicate 1	GSE11611	Combined gene expression and QTL analysis of soybean quantitative resistance to Phytophthora sojae
20.5	99.7	GSM147956	Laser capture microdissected (LCM) outer integument at the globular stage, biological replicate 3	GSE6414	Expression data from soybean seed compartments with embryos at the globular stage
18.6	99.7	GSM293015	20_1089.1N.R055L, Experimental replicate 1	GSE11611	Combined gene expression and QTL analysis of soybean quantitative resistance to Phytophthora sojae

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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF	Ev	BS	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.30	2e-55	218	PsAffx.C68000069_at	PsAffx.C68000069	-	-	2e+0	At4g24090	unknown protein	C.G.	S.X.	Please select
0.32	1e-50	202	PsAffx.C68000068_at	PsAffx.C68000068	-	-	6e+0	At4g33940	zinc finger (C3HC4-type RING finger) family protein	C.G.	S.X.	Please select
0.02	4e-10	67	PsAffx.C77000058_at	PsAffx.C77000058	-	-	1e-3	At2g22430	ATHB6	C.G.	S.X.	Please select
0.03	7e-6	54	PsAffx.C82000018_at	PsAffx.C82000018	-	-	3e-1	At5g07260	homeobox protein-related	C.G.	S.X.	Please select
0.04	7e-6	54	PsAffx.C410000003_at	PsAffx.C410000003	-	-	1e+1	At5g51190	AP2 domain-containing transcription factor, putative	C.G.	S.X.	Please select
0.02	3e-5	52	PsAffx.C9000082_at	PsAffx.C9000082	-	-	4e+0	At5g15970	KIN2	C.G.	S.X.	Please select
0.07	3e-5	52	PsAffx.C68000067_at	PsAffx.C68000067	-	-	9e+0	At5g56100	glycine-rich protein / oleosin	C.G.	S.X.	Please select
0.03	3e-5	52	PsAffx.C49000038_at	PsAffx.C49000038	-	-	2e+0	At2g05070	LHCB2.2	C.G.	S.X.	Please select
0.04	1e-4	50	PsAffx.C64000071_at	PsAffx.C64000071	-	-	9e-1	At5g35610	paired amphipathic helix repeat-containing protein	C.G.	S.X.	Please select

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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF	Ev	BS	Species	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.02	4e+0	34	Arabidopsis thaliana	At2g41410	818739	calmodulin, putative	F:calcium ion binding;P:unknown;C:plasma membrane;MPFOB	-	-	-	C.G.	S.X.	Please selectath TAIR (integral)ath,osa KEGG (integral)ath PlantTribes (integral)ath,osa Gramene (integral)ath MPSS (genome)ath InParanoid (ortholog)ath Plant RBP (ortholog)ath SIGnAL (T-DNA)ath RAFL (full-length clone)ath AtGDB (genome)ath Genevestigator (expression)ath,ptr eFP Browser (expression)ath AVT (expression)ath ATTED-II (co-expression)ath AtcisDB (cis-element)ath SUBA (hydropathy)ath AtProteomeath Plant Proteome Databaseath PMN (pathway)ath,osa KaPPA-View 4 (pathway)ath RnR (over-expression)ath iHOP (report)
0.01	5e-1	36	Hordeum vulgare	Contig16134_at	Contig16134	-	-	6e+0	At5g11620	SWIM zinc finger family protein / mitogen-activated protein kinase kinase kinase (MAPKKK)-related	C.G.	S.X.	Please select
0.01	2e+0	36	Oryza sativa	Os.11039.1.S1_s_at	-	-	-	0			C.G.	S.X.	Please selectath,osa KEGG (integral)ath,osa Gramene (integral)ath,osa KaPPA-View 4 (pathway)
0.02	3e-2	42	Populus trichocarpa	PtpAffx.48383.1.A1_at	DN485567	hypothetical protein	-	6e-3	At5g53920	ribosomal protein L11 methyltransferase-related	C.G.	S.X.	Please selectath,ptr eFP Browser (expression)
0.02	5e+0	34	Triticum aestivum	TaAffx.85785.1.S1_at	CA619645	-	-	4e+0	At3g05100	-	C.G.	S.X.	Please select
0.01	1e+0	34	Vitis vinifera	1610393_at	CD798664	hypothetical protein LOC100265545	-	4e-12	At3g11400	eukaryotic translation initiation factor 3G / eIF3g	C.G.	S.X.	Please select
0.02	2e+0	34	Zea mays	Zm.4465.1.A1_at	AI714996	-	-	2e-1	At3g27210	unknown protein	C.G.	S.X.	Please select

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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC	GO ID	Process Name

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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID	Link to Kappa-View	Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID	Link to KEGG PATHWAY	Pathway Name

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