Gene omics information

Query gene ID	PsAffx.C62000006_at
Gene name
Organism	Glycine max

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF	%ile	Gene/Probe ID	Repr.ID	Gene Name	Functional Description	Ev	AGI code	Arabidopsis gene name	S.X.	H.G.	Other DB
0.91	98.6	PsAffx.C62000006_at	PsAffx.C62000006	-	-	2e-1	At5g25390	SHN2 (shine2)	S.X.	H.G.	Please select
0.07	10.2	HgAffx.17965.1.S1_at	CB278425	-	-	2e+0	At2g23340	AP2 domain-containing transcription factor, putative	S.X.	H.G.	Please select
0.05	8.0	GmaAffx.89861.1.S1_s_at	CK606562	Ubiquitin	-	3e-127	At4g05320	UBQ10 (POLYUBIQUITIN 10)	S.X.	H.G.	Please select
0.04	7.0	Gma.2534.1.S1_s_at	BI967545	Ubiquitin	-	2e-140	At4g05320	UBQ10 (POLYUBIQUITIN 10)	S.X.	H.G.	Please select
0.03	5.8	PsAffx.C22000090_at	PsAffx.C22000090	-	-	3e-2	At5g55690	MADS-box protein (AGL47)	S.X.	H.G.	Please select
0.01	3.4	GmaAffx.63626.1.S1_at	BG508018	-	-	5e+0	At5g43430	ETFBETA	S.X.	H.G.	Please select

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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.

Std2 GX	%ile	GSM ID	Assay Name	GSE ID	Experiment Title
29.8	99.8	GSM292908	81_1454.1L.R277P, Experimental replicate 1	GSE11611	Combined gene expression and QTL analysis of soybean quantitative resistance to Phytophthora sojae
28.3	99.8	GSM244916	4_SLO.I3U1.CEL, Experimental replicate 1	GSE9687	Expression patterns in time and space during P.sojae infection of soybean cultivars differing in quantitative resistance
22.6	99.8	GSM244880	33_SLO.M3W1.CEL, Experimental replicate 1	GSE9687	Expression patterns in time and space during P.sojae infection of soybean cultivars differing in quantitative resistance
21.0	99.7	GSM244926	7_SLO.I1W4.CEL, Experimental replicate 4	GSE9687	Expression patterns in time and space during P.sojae infection of soybean cultivars differing in quantitative resistance
19.9	99.7	GSM147947	Laser capture microdissected (LCM) epidermis at the globular stage, biological replicate 3	GSE6414	Expression data from soybean seed compartments with embryos at the globular stage
19.0	99.7	GSM147953	Laser capture microdissected (LCM) inner integument at the globular stage, biological replicate 3	GSE6414	Expression data from soybean seed compartments with embryos at the globular stage
18.0	99.7	GSM244833	22_VP9.M1W1.CEL, Experimental replicate 1	GSE9687	Expression patterns in time and space during P.sojae infection of soybean cultivars differing in quantitative resistance
16.9	99.7	GSM293105	20_C054.1O.R9O3P, Experimental replicate 1	GSE11611	Combined gene expression and QTL analysis of soybean quantitative resistance to Phytophthora sojae
16.4	99.6	GSM294653	26_2608.2M.R201P, Experimental replicate 2	GSE11611	Combined gene expression and QTL analysis of soybean quantitative resistance to Phytophthora sojae
14.7	99.6	GSM293113	28_C047.1O.R9O2L, Experimental replicate 1	GSE11611	Combined gene expression and QTL analysis of soybean quantitative resistance to Phytophthora sojae

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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF	Ev	BS	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.01	2e-2	42	PsAffx.C315000002_at	PsAffx.C315000002	-	-	6e-1	At1g80130	binding	C.G.	S.X.	Please select
0.01	2e-2	42	PsAffx.C116000027_s_at	PsAffx.C116000027	-	-	4e-1	At5g61270	PIF7 (PHYTOCHROME-INTERACTING FACTOR7)	C.G.	S.X.	Please select
0.02	2e-2	42	PsAffx.C106000048_at	PsAffx.C106000048	-	-	7e+0	At2g32765	SUMO5 (SMALL UBIQUITINRELATED MODIFIER 5)	C.G.	S.X.	Please select
0.01	9e-2	40	PsAffx.CL384Contig1_at	PsAffx.CL384Contig1	-	-	3e+0	At5g09480	hydroxyproline-rich glycoprotein family protein	C.G.	S.X.	Please select
0.02	9e-2	40	PsAffx.C10000028_at	PsAffx.C10000028	-	-	8e+0	At5g61230	ankyrin repeat family protein	C.G.	S.X.	Please select
0.01	3e-1	38	PsAffx.CL1569Contig1_at	PsAffx.CL1569Contig1	-	-	2e+0	At4g09270	unknown protein	C.G.	S.X.	Please select
0.01	3e-1	38	PsAffx.C99000030_s_at	PsAffx.C99000030	-	-	2e+0	At5g25940	early nodulin-related	C.G.	S.X.	Please select
0.01	3e-1	38	PsAffx.C99000030_at	PsAffx.C99000030	-	-	2e+0	At5g25940	early nodulin-related	C.G.	S.X.	Please select
0.01	3e-1	38	PsAffx.C54000046_at	PsAffx.C54000046	-	-	2e-1	At5g40645	nitrate-responsive NOI protein, putative	C.G.	S.X.	Please select

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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF	Ev	BS	Species	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.01	2e-1	38	Arabidopsis thaliana	At5g25390	832611	SHN2 (shine2)	encodes a member of the ERF (ethylene response factor) subfamily B-6 of ERF/AP2 transcription factor family. The protein contains one AP2 domain. There are 12 members in this subfamily including RAP2.11.	-	-	-	C.G.	S.X.	Please selectath TAIR (integral)ath,osa KEGG (integral)ath PlantTribes (integral)ath,osa Gramene (integral)ath MPSS (genome)ath InParanoid (ortholog)ath Plant RBP (ortholog)ath SIGnAL (T-DNA)ath RAFL (full-length clone)ath AtGDB (genome)ath Genevestigator (expression)ath,ptr eFP Browser (expression)ath AVT (expression)ath ATTED-II (co-expression)ath AtcisDB (cis-element)ath SUBA (hydropathy)ath AtProteomeath Plant Proteome Databaseath PMN (pathway)ath,osa KaPPA-View 4 (pathway)ath RnR (over-expression)ath iHOP (report)
0.01	1e-1	38	Hordeum vulgare	Contig5771_at	Contig5771	-	-	1e-2	At5g58900	myb family transcription factor	C.G.	S.X.	Please select
0.02	1e-1	40	Oryza sativa	OsAffx.7034.1.S1_at	-	-	-	0			C.G.	S.X.	Please selectath,osa KEGG (integral)ath,osa Gramene (integral)ath,osa KaPPA-View 4 (pathway)
0.01	1e+0	36	Populus trichocarpa	PtpAffx.82840.1.A1_at	CV232043	hypothetical protein	-	1e-1	At3g47675	unknown protein	C.G.	S.X.	Please selectath,ptr eFP Browser (expression)
0.02	4e-3	44	Triticum aestivum	TaAffx.23016.1.S1_at	CA741737	-	-	3e-7	At3g04920	40S ribosomal protein S24 (RPS24A)	C.G.	S.X.	Please select
0.02	4e+0	32	Vitis vinifera	1617339_at	CF207748	-	-	1e+0	At4g09760	choline kinase, putative	C.G.	S.X.	Please select
0.02	4e-1	36	Zea mays	ZmAffx.1149.1.A1_at	AW424528	-	-	3e+0	At3g07930	HhH-GPD base excision DNA repair family protein	C.G.	S.X.	Please select

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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC	GO ID	Process Name

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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID	Link to Kappa-View	Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID	Link to KEGG PATHWAY	Pathway Name

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