Gene omics information

Query gene ID	PsAffx.C59000014_at
Gene name
Organism	Glycine max

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF	%ile	Gene/Probe ID	Repr.ID	Gene Name	Functional Description	Ev	AGI code	Arabidopsis gene name	S.X.	H.G.	Other DB
0.48	67.7	PsAffx.C59000014_at	PsAffx.C59000014	-	-	1e-1	At5g53910	(S)-2-hydroxy-acid oxidase, peroxisomal, putative / glycolate oxidase, putative / short chain alpha-hydroxy acid oxidase, putative	S.X.	H.G.	Please select
0.48	67.7	HgAffx.19601.1.S1_at	CA939579	-	-	4e+0	At5g51845	-	S.X.	H.G.	Please select
0.47	66.6	HgAffx.9055.1.S1_at	CB379446	-	-	2e+0	At5g49015	Expressed protein	S.X.	H.G.	Please select
0.40	57.1	HgAffx.16208.1.S1_at	CB935526	-	-	5e+0	At5g55750	hydroxyproline-rich glycoprotein family protein	S.X.	H.G.	Please select
0.34	47.2	PsAffx.CL1693Contig1_at	PsAffx.CL1693Contig1	-	-	6e+0	At5g20190	binding	S.X.	H.G.	Please select
0.25	32.6	HgAffx.13668.1.S1_at	CB374314	-	-	6e-1	At5g49710	unknown protein	S.X.	H.G.	Please select
0.24	30.9	HgAffx.18004.1.S1_at	CB279764	-	-	2e+0	At4g13000	protein kinase family protein	S.X.	H.G.	Please select
0.24	30.9	HgAffx.14720.1.A1_at	CK350926	-	-	2e-1	At1g66360	C2 domain-containing protein	S.X.	H.G.	Please select
0.21	26.6	HgAffx.3203.1.A1_at	CK350831	-	-	3e+0	At5g23760	heavy-metal-associated domain-containing protein	S.X.	H.G.	Please select
0.20	25.1	PsAffx.C1000091_at	PsAffx.C1000091	-	-	4e-1	At2g21490	LEA (DEHYDRIN LEA)	S.X.	H.G.	Please select

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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.

Std2 GX	%ile	GSM ID	Assay Name	GSE ID	Experiment Title
90.4	100.0	GSM292923	95_1465.1L.R283L, Experimental replicate 1	GSE11611	Combined gene expression and QTL analysis of soybean quantitative resistance to Phytophthora sojae
15.0	99.6	GSM292198	5_C008.1A.V7A2P, Experimental replicate 1	GSE11611	Combined gene expression and QTL analysis of soybean quantitative resistance to Phytophthora sojae
9.9	99.3	GSM292838	18_C211.1L.SLL3L, Experimental replicate 1	GSE11611	Combined gene expression and QTL analysis of soybean quantitative resistance to Phytophthora sojae
7.8	99.0	GSM294268	23_2428.2I.R297P, Experimental replicate 2	GSE11611	Combined gene expression and QTL analysis of soybean quantitative resistance to Phytophthora sojae
7.3	98.9	GSM293082	81_C019.1N.R9N1U, Experimental replicate 1	GSE11611	Combined gene expression and QTL analysis of soybean quantitative resistance to Phytophthora sojae
7.2	98.9	GSM292448	49_C110.1G.V7G1P, Experimental replicate 1	GSE11611	Combined gene expression and QTL analysis of soybean quantitative resistance to Phytophthora sojae
6.9	98.8	GSM293195	77_1130.1O.R082P, Experimental replicate 1	GSE11611	Combined gene expression and QTL analysis of soybean quantitative resistance to Phytophthora sojae
6.2	98.6	GSM292229	25_C029.1B.R9B2L, Experimental replicate 1	GSE11611	Combined gene expression and QTL analysis of soybean quantitative resistance to Phytophthora sojae
6.2	98.6	GSM294420	76_2449.2J.R161U, Experimental replicate 2	GSE11611	Combined gene expression and QTL analysis of soybean quantitative resistance to Phytophthora sojae
6.0	98.5	GSM171694	32_V.L.M.3, Experimental replicate V	GSE7124	Plant and pathogen gene expression during infection by P.sojae of 8 soybean cultivars varying in quantitative resistance

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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF	Ev	BS	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.03	2e-4	48	PsAffx.C96000027_at	PsAffx.C96000027	-	-	2e-1	At5g57345	unknown protein	C.G.	S.X.	Please select
0.02	9e-4	46	PsAffx.C96000026_at	PsAffx.C96000026	-	-	1e+0	At5g37200	zinc finger (C3HC4-type RING finger) family protein	C.G.	S.X.	Please select
0.02	5e-2	40	PsAffx.C23000118_at	PsAffx.C23000118	-	-	2e+0	Atmg01040	-	C.G.	S.X.	Please select
0.03	5e-2	40	PsAffx.C166000018_at	PsAffx.C166000018	-	-	6e-1	At2g28410	unknown protein	C.G.	S.X.	Please select
0.02	2e-1	38	PsAffx.CL2359Contig1_at	PsAffx.CL2359Contig1	-	-	5e+0	At3g63250	HMT2 (HOMOCYSTEINE METHYLTRANSFERASE 2)	C.G.	S.X.	Please select
0.02	2e-1	38	PsAffx.C14000057_at	PsAffx.C14000057	-	-	8e+0	At5g25070	unknown protein	C.G.	S.X.	Please select
0.02	8e-1	36	PsAffx.C39000011_at	PsAffx.C39000011	-	-	2e+0	At5g51795	Kin17 DNA-binding protein-related	C.G.	S.X.	Please select
0.01	8e-1	36	PsAffx.C33000025_at	PsAffx.C33000025	-	-	4e-1	At3g43520	unknown protein	C.G.	S.X.	Please select
0.01	8e-1	36	PsAffx.C25000065_at	PsAffx.C25000065	-	-	3e-1	At2g26720	plastocyanin-like domain-containing protein / mavicyanin, putative	C.G.	S.X.	Please select

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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF	Ev	BS	Species	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.02	1e-1	38	Arabidopsis thaliana	At5g53910	835474	(S)-2-hydroxy-acid oxidase, peroxisomal, putative / glycolate oxidase, putative / short chain alpha-hydroxy acid oxidase, putative	F:ubiquitin-protein ligase activity, protein binding, zinc ion binding;P:unknown;C:unknown;PMOFV	-	-	-	C.G.	S.X.	Please selectath TAIR (integral)ath,osa KEGG (integral)ath PlantTribes (integral)ath,osa Gramene (integral)ath MPSS (genome)ath InParanoid (ortholog)ath Plant RBP (ortholog)ath SIGnAL (T-DNA)ath RAFL (full-length clone)ath AtGDB (genome)ath Genevestigator (expression)ath,ptr eFP Browser (expression)ath AVT (expression)ath ATTED-II (co-expression)ath AtcisDB (cis-element)ath SUBA (hydropathy)ath AtProteomeath Plant Proteome Databaseath PMN (pathway)ath,osa KaPPA-View 4 (pathway)ath RnR (over-expression)ath iHOP (report)
0.02	1e+0	34	Hordeum vulgare	Contig8459_at	Contig8459	-	-	4e-1	At4g36900	RAP2.10 (related to AP2 10)	C.G.	S.X.	Please select
0.02	1e+0	36	Oryza sativa	Os06g0195800	AK111076.1	-	Conserved hypothetical protein	2e+0	At4g19270	unknown protein	C.G.	S.X.	Please selectath,osa KEGG (integral)ath,osa Gramene (integral)ath,osa KaPPA-View 4 (pathway)
0.02	3e+0	34	Populus trichocarpa	PtpAffx.24590.1.S1_at	CX169344	hypothetical protein	-	8e-2	At5g25570	unknown protein	C.G.	S.X.	Please selectath,ptr eFP Browser (expression)
0.03	6e-1	36	Triticum aestivum	Ta.17049.1.S1_at	CA617028	-	-	8e-1	At2g35910	zinc finger (C3HC4-type RING finger) family protein	C.G.	S.X.	Please select
0.02	7e-1	34	Vitis vinifera	1618218_at	CA817669	-	-	8e-14	At3g60260	phagocytosis and cell motility protein ELMO1-related	C.G.	S.X.	Please select
0.02	1e+0	34	Zea mays	Zm.15513.1.S1_at	AW330819	-	-	8e-2	At5g58190	ECT10	C.G.	S.X.	Please select

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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC	GO ID	Process Name

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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID	Link to Kappa-View	Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID	Link to KEGG PATHWAY	Pathway Name

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