Gene omics information

Query gene ID	PsAffx.C52000084_at
Gene name
Organism	Glycine max

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF	%ile	Gene/Probe ID	Repr.ID	Gene Name	Functional Description	Ev	AGI code	Arabidopsis gene name	S.X.	H.G.	Other DB
0.78	90.6	PsAffx.C52000084_at	PsAffx.C52000084	-	-	2e+0	At5g22140	pyridine nucleotide-disulphide oxidoreductase family protein	S.X.	H.G.	Please select
0.73	88.9	HgAffx.9055.1.S1_at	CB379446	-	-	2e+0	At5g49015	Expressed protein	S.X.	H.G.	Please select
0.70	87.1	HgAffx.16208.1.S1_at	CB935526	-	-	5e+0	At5g55750	hydroxyproline-rich glycoprotein family protein	S.X.	H.G.	Please select
0.63	82.9	PsAffx.psMA010xD09f_at	PsAffx.psMA010xD09f	-	-	1e+0	At1g07985	Expressed protein	S.X.	H.G.	Please select
0.60	80.7	PsAffx.CL1693Contig1_at	PsAffx.CL1693Contig1	-	-	6e+0	At5g20190	binding	S.X.	H.G.	Please select
0.60	80.7	HgAffx.3203.1.A1_at	CK350831	-	-	3e+0	At5g23760	heavy-metal-associated domain-containing protein	S.X.	H.G.	Please select
0.58	78.8	PsAffx.psHB004xH08f_at	PsAffx.psHB004xH08f	-	-	5e+0	At3g61840	unknown protein	S.X.	H.G.	Please select
0.58	78.8	PsAffx.C34000064_at	PsAffx.C34000064	-	-	2e+0	At5g29560	calcium ion binding	S.X.	H.G.	Please select
0.58	78.8	GmaAffx.14280.1.S1_at	BM095066	-	-	1e-8	At1g22710	SUC2 (SUCROSE-PROTON SYMPORTER 2)	S.X.	H.G.	Please select
0.50	71.7	HgAffx.14720.1.A1_at	CK350926	-	-	2e-1	At1g66360	C2 domain-containing protein	S.X.	H.G.	Please select

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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.

Std2 GX	%ile	GSM ID	Assay Name	GSE ID	Experiment Title
18.3	99.7	GSM292838	18_C211.1L.SLL3L, Experimental replicate 1	GSE11611	Combined gene expression and QTL analysis of soybean quantitative resistance to Phytophthora sojae
13.9	99.6	GSM294268	23_2428.2I.R297P, Experimental replicate 2	GSE11611	Combined gene expression and QTL analysis of soybean quantitative resistance to Phytophthora sojae
13.7	99.5	GSM293641	68_2065.2B.R129U, Experimental replicate 2	GSE11611	Combined gene expression and QTL analysis of soybean quantitative resistance to Phytophthora sojae
13.4	99.5	GSM293082	81_C019.1N.R9N1U, Experimental replicate 1	GSE11611	Combined gene expression and QTL analysis of soybean quantitative resistance to Phytophthora sojae
12.0	99.4	GSM292198	5_C008.1A.V7A2P, Experimental replicate 1	GSE11611	Combined gene expression and QTL analysis of soybean quantitative resistance to Phytophthora sojae
9.6	99.2	GSM292448	49_C110.1G.V7G1P, Experimental replicate 1	GSE11611	Combined gene expression and QTL analysis of soybean quantitative resistance to Phytophthora sojae
7.5	98.9	GSM294473	3_3182.2K.V7K1P, Experimental replicate 2	GSE11611	Combined gene expression and QTL analysis of soybean quantitative resistance to Phytophthora sojae
6.8	98.7	GSM294381	40_2443.2J.R083L, Experimental replicate 2	GSE11611	Combined gene expression and QTL analysis of soybean quantitative resistance to Phytophthora sojae
6.6	98.7	GSM244916	4_SLO.I3U1.CEL, Experimental replicate 1	GSE9687	Expression patterns in time and space during P.sojae infection of soybean cultivars differing in quantitative resistance
6.2	98.6	GSM294423	79_2455.2J.R220L, Experimental replicate 2	GSE11611	Combined gene expression and QTL analysis of soybean quantitative resistance to Phytophthora sojae

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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF	Ev	BS	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.02	6e-1	36	HgAffx.13905.4.S1_at	CB378205	-	-	1e+0	At1g08570	ACHT4 (ATYPICAL CYS HIS RICH THIOREDOXIN 4)	C.G.	S.X.	Please select
0.02	2e+0	34	PsAffx.C73000046_at	PsAffx.C73000046	-	-	9e+0	At4g13500	unknown protein	C.G.	S.X.	Please select
0.01	2e+0	34	PsAffx.C62000065_at	PsAffx.C62000065	-	-	5e-2	At2g45150	phosphatidate cytidylyltransferase family protein	C.G.	S.X.	Please select
0.06	2e+0	34	PsAffx.C15000090_at	PsAffx.C15000090	-	-	1e-1	At1g66910	protein kinase, putative	C.G.	S.X.	Please select
0.01	2e+0	34	PsAffx.C134000012_at	PsAffx.C134000012	-	-	7e+0	At4g00100	ATRPS13A (ARABIDOPSIS THALIANA RIBOSOMAL PROTEIN S13A)	C.G.	S.X.	Please select
0.02	2e+0	34	HgAffx.11487.1.S1_at	CB934963	-	-	5e+0	At3g49580	LSU1 (RESPONSE TO LOW SULFUR 1)	C.G.	S.X.	Please select
0.01	2e+0	34	Gma.8072.1.S1_a_at	BQ627840	G-box binding factor	-	1e-9	At2g46270	GBF3 (G-BOX BINDING FACTOR 3)	C.G.	S.X.	Please select
0.02	9e+0	32	PsAffx.CL863Contig1_at	PsAffx.CL863Contig1	-	-	8e+0	At4g09840	unknown protein	C.G.	S.X.	Please select
0.01	9e+0	32	PsAffx.C83000038_at	PsAffx.C83000038	-	-	3e-1	At3g06090	unknown protein	C.G.	S.X.	Please select

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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF	Ev	BS	Species	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.02	2e+0	34	Arabidopsis thaliana	At5g22140	832275	pyridine nucleotide-disulphide oxidoreductase family protein	F:electron carrier activity, oxidoreductase activity, FAD binding;P:unknown;C:plasma membrane;BOFAMP	-	-	-	C.G.	S.X.	Please selectath TAIR (integral)ath,osa KEGG (integral)ath PlantTribes (integral)ath,osa Gramene (integral)ath MPSS (genome)ath InParanoid (ortholog)ath Plant RBP (ortholog)ath SIGnAL (T-DNA)ath RAFL (full-length clone)ath AtGDB (genome)ath Genevestigator (expression)ath,ptr eFP Browser (expression)ath AVT (expression)ath ATTED-II (co-expression)ath AtcisDB (cis-element)ath SUBA (hydropathy)ath AtProteomeath Plant Proteome Databaseath PMN (pathway)ath,osa KaPPA-View 4 (pathway)ath RnR (over-expression)ath iHOP (report)
0.03	3e+0	32	Hordeum vulgare	rbags16m05_s_at	rbags16m05	-	-	7e-1	At2g21150	XCT (XAP5 CIRCADIAN TIMEKEEPER)	C.G.	S.X.	Please select
0.02	3e+0	34	Oryza sativa	Os.51325.1.S1_at	-	-	-	0			C.G.	S.X.	Please selectath,osa KEGG (integral)ath,osa Gramene (integral)ath,osa KaPPA-View 4 (pathway)
0.03	9e+0	32	Populus trichocarpa	PtpAffx.215422.1.S1_at	pmrna29591	hypothetical protein	-	2e-1	At1g26210	unknown protein	C.G.	S.X.	Please selectath,ptr eFP Browser (expression)
0.03	2e+0	34	Triticum aestivum	TaAffx.30388.1.S1_at	CA625692	-	-	4e+0	At2g36026	-	C.G.	S.X.	Please select
0.02	8e+0	30	Vitis vinifera	1621762_at	CF371697	hypothetical protein LOC100242812	-	6e-30	At3g55380	UBC14 (ubiquitin-conjugating enzyme 14)	C.G.	S.X.	Please select
0.03	3e+0	32	Zea mays	ZmAffx.447.1.A1_at	AI677073	hypothetical protein LOC100193673	-	8e-1	At3g03270	universal stress protein (USP) family protein / early nodulin ENOD18 family protein	C.G.	S.X.	Please select

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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC	GO ID	Process Name

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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID	Link to Kappa-View	Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID	Link to KEGG PATHWAY	Pathway Name

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