CoP: Co-expressed Biological Processes

Gene omics information

Query gene ID PsAffx.C47000085_at

Gene name

Organism Glycine max

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF %ile Gene/Probe ID Repr.ID Gene Name Functional Description Ev AGI code Arabidopsis gene name S.X. H.G. Other DB
0.91 98.6 PsAffx.C47000085_at PsAffx.C47000085 - - 2e+0 At1g04350 2-oxoglutarate-dependent dioxygenase, putative S.X. H.G.
0.91 98.6 PsAffx.C86000057_at PsAffx.C86000057 - - 2e+0 At1g06690 aldo/keto reductase family protein S.X. H.G.
0.91 98.6 HgAffx.24315.1.S1_at CB374815 - - 9e-1 At4g15930 microtubule motor S.X. H.G.
0.91 98.6 PsAffx.C154000024_at PsAffx.C154000024 - - 2e-1 At5g62160 AtZIP12 (ZINC TRANSPORTER 12 PRECURSOR) S.X. H.G.
0.80 91.5 PsAffx.C177000015_at PsAffx.C177000015 - - 2e-1 At4g25150 acid phosphatase, putative S.X. H.G.
0.61 81.8 HgAffx.5776.1.S1_at CB826435 - - 1e+0 At5g59030 COPT1 (copper transporter 1) S.X. H.G.
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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX %ile GSM ID Assay Name GSE ID Experiment Title
2356.2 100.0 GSM292923 95_1465.1L.R283L, Experimental replicate 1 GSE11611 Combined gene expression and QTL analysis of soybean quantitative resistance to Phytophthora sojae
28.1 99.8 GSM292839 19_C199.1L.V7L1U, Experimental replicate 1 GSE11611 Combined gene expression and QTL analysis of soybean quantitative resistance to Phytophthora sojae
16.8 99.7 GSM171678 29_V.I.I.5, Experimental replicate V GSE7124 Plant and pathogen gene expression during infection by P.sojae of 8 soybean cultivars varying in quantitative resistance
11.8 99.4 GSM292899 73_1487.1L.R294L, Experimental replicate 1 GSE11611 Combined gene expression and QTL analysis of soybean quantitative resistance to Phytophthora sojae
10.4 99.3 GSM292190 50-C013.1A.SLA3L, Experimental replicate 1 GSE11611 Combined gene expression and QTL analysis of soybean quantitative resistance to Phytophthora sojae
10.3 99.3 GSM182043 Laser capture microdissected (LCM) inner integument at the heart stage, biological replicate 1 GSE7511 Expression data from soybean seed compartments with embryos at the heart stage
10.2 99.3 GSM292448 49_C110.1G.V7G1P, Experimental replicate 1 GSE11611 Combined gene expression and QTL analysis of soybean quantitative resistance to Phytophthora sojae
8.6 99.1 GSM292162 15-1002.1A.R001P, Experimental replicate 1 GSE11611 Combined gene expression and QTL analysis of soybean quantitative resistance to Phytophthora sojae
7.1 98.8 GSM293918 66_2224.2E.R228P, Experimental replicate 2 GSE11611 Combined gene expression and QTL analysis of soybean quantitative resistance to Phytophthora sojae
6.4 98.6 GSM294244 92_2340.2H.R202P, Experimental replicate 2 GSE11611 Combined gene expression and QTL analysis of soybean quantitative resistance to Phytophthora sojae
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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF Ev BS Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.04 3e-33 145 PsAffx.psMY005iA04r_at PsAffx.psMY005iA04r - - 3e-1 At5g62420 aldo/keto reductase family protein C.G. S.X.
0.01 5e-1 38 PsAffx.C83000045_at PsAffx.C83000045 - - 6e+0 At3g56400 WRKY70 C.G. S.X.
0.01 5e-1 38 PsAffx.C75000053_at PsAffx.C75000053 - - 5e-1 At1g47271 - C.G. S.X.
0.01 5e-1 38 PsAffx.C64000073_at PsAffx.C64000073 - - 7e+0 At5g62575 unknown protein C.G. S.X.
0.01 5e-1 38 PsAffx.C221000011_at PsAffx.C221000011 - - 6e-1 At3g63470 scpl40 (serine carboxypeptidase-like 40) C.G. S.X.
0.01 5e-1 38 PsAffx.C208000002_s_at PsAffx.C208000002 - - 4e+0 At1g64010 serpin, putative / serine protease inhibitor, putative C.G. S.X.
0.01 5e-1 38 PsAffx.C159000004_at PsAffx.C159000004 - - 6e+0 At3g26511 unknown protein C.G. S.X.
0.01 5e-1 38 HgAffx.11022.1.S1_at CB935432 - - 1e-1 At5g61270 PIF7 (PHYTOCHROME-INTERACTING FACTOR7) C.G. S.X.
0.01 2e+0 36 PsAffx.psZS005xP04f_at PsAffx.psZS005xP04f - - 4e+0 At3g28130 nodulin MtN21 family protein C.G. S.X.
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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF Ev BS Species Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.01 2e+0 36 Arabidopsis thaliana At1g04350 839542 2-oxoglutarate-dependent dioxygenase, putative encodes a protein whose sequence is similar to 2-oxoglutarate-dependent dioxygenase - - - C.G. S.X.
0.01 3e+0 34 Hordeum vulgare Contig22130_at Contig22130 - - 5e-6 At5g43760 KCS20 (3-KETOACYL-COA SYNTHASE 20) C.G. S.X.
0.01 8e-1 38 Oryza sativa Os12g0182700 AK072557.1 - - 1e-2 At4g33470 hda14 (histone deacetylase 14) C.G. S.X.
0.01 5e-1 38 Populus trichocarpa PtpAffx.4851.1.S1_a_at DN486481 hypothetical protein - 6e+0 At2g34110 - C.G. S.X.
0.01 4e-1 38 Triticum aestivum Ta.23277.2.S1_at CA623454 - - 9e-1 At1g49570 peroxidase, putative C.G. S.X.
0.01 1e-1 38 Vitis vinifera 1609176_at CF404427 hypothetical protein LOC100247851 - 4e+0 At1g27160 valyl-tRNA synthetase / valine--tRNA ligase-related C.G. S.X.
0.01 7e-1 36 Zea mays Zm.1665.1.A1_at AW355870 - - 3e-1 At5g28800 unknown protein C.G. S.X.
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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC GO ID Process Name
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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID Link to Kappa-View Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID Link to KEGG PATHWAY Pathway Name
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