Gene omics information

Query gene ID	PsAffx.C358000001_at
Gene name
Organism	Glycine max

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF	%ile	Gene/Probe ID	Repr.ID	Gene Name	Functional Description	Ev	AGI code	Arabidopsis gene name	S.X.	H.G.	Other DB
0.91	98.6	PsAffx.C358000001_at	PsAffx.C358000001	-	-	7e-1	At4g11300	unknown protein	S.X.	H.G.	Please select
0.11	14.2	GmaAffx.70950.1.S1_at	AW185036	-	-	3e+0	At3g10880	unknown protein	S.X.	H.G.	Please select
0.07	10.2	GmaAffx.74531.1.S1_at	BI893004	-	-	4e+0	At5g38790	unknown protein	S.X.	H.G.	Please select
0.03	5.8	GmaAffx.61457.1.A1_at	CD405281	-	-	1e-2	At3g13500	unknown protein	S.X.	H.G.	Please select
0.01	3.4	GmaAffx.71097.1.S1_at	AW317344	-	-	6e+0	At4g00690	ULP1B (UB-LIKE PROTEASE 1B)	S.X.	H.G.	Please select
0.00	1.4	Gma.3839.1.S1_a_at	CD391787	-	-	2e-69	At1g60780	HAP13 (HAPLESS 13)	S.X.	H.G.	Please select

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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.

Std2 GX	%ile	GSM ID	Assay Name	GSE ID	Experiment Title
27.2	99.8	GSM292448	49_C110.1G.V7G1P, Experimental replicate 1	GSE11611	Combined gene expression and QTL analysis of soybean quantitative resistance to Phytophthora sojae
21.4	99.8	GSM182035	Laser capture microdissected (LCM) endosperm at the heart stage, biological replicate 1	GSE7511	Expression data from soybean seed compartments with embryos at the heart stage
14.4	99.6	GSM191084	Soybean_Cotyledon_EPD2	GSE7881	Expression data from soybean seed compartments with embryos at the cotyledon stage
13.1	99.5	GSM292373	47_C104.1F.R9F3P, Experimental replicate 1	GSE11611	Combined gene expression and QTL analysis of soybean quantitative resistance to Phytophthora sojae
11.7	99.4	GSM244883	34_CON.M5W2.CEL, Experimental replicate 2	GSE9687	Expression patterns in time and space during P.sojae infection of soybean cultivars differing in quantitative resistance
10.1	99.3	GSM171679	29_W.A.I.3, Experimental replicate W	GSE7124	Plant and pathogen gene expression during infection by P.sojae of 8 soybean cultivars varying in quantitative resistance
9.9	99.3	GSM244836	23_V71.M5W2.CEL, Experimental replicate 2	GSE9687	Expression patterns in time and space during P.sojae infection of soybean cultivars differing in quantitative resistance
9.1	99.2	GSM292243	56_C025.1B.SLB2U, Experimental replicate 1	GSE11611	Combined gene expression and QTL analysis of soybean quantitative resistance to Phytophthora sojae
9.0	99.2	GSM292823	80_1408.1K.R253P, Experimental replicate 1	GSE11611	Combined gene expression and QTL analysis of soybean quantitative resistance to Phytophthora sojae
8.3	99.1	GSM147954	Laser capture microdissected (LCM) outer integument at the globular stage, biological replicate 1	GSE6414	Expression data from soybean seed compartments with embryos at the globular stage

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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF	Ev	BS	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.02	3e-25	119	PsAffx.C117000046_at	PsAffx.C117000046	-	-	1e-1	At3g04200	germin-like protein, putative	C.G.	S.X.	Please select
0.01	3e-22	109	PsAffx.C256000020_at	PsAffx.C256000020	-	-	2e+0	At5g17460	unknown protein	C.G.	S.X.	Please select
0.01	2e-20	103	PsAffx.C6000190_at	PsAffx.C6000190	-	-	4e+0	At1g60030	xanthine/uracil permease family protein	C.G.	S.X.	Please select
0.01	9e-1	38	PsAffx.psHB003xD11f_at	PsAffx.psHB003xD11f	-	-	4e+0	At3g62336	unknown protein	C.G.	S.X.	Please select
0.00	9e-1	38	PsAffx.C83000005_at	PsAffx.C83000005	-	-	9e+0	At5g63952	unknown protein	C.G.	S.X.	Please select
0.01	9e-1	38	PsAffx.C614000002_at	PsAffx.C614000002	-	-	1e+0	At3g58877	unknown protein	C.G.	S.X.	Please select
0.00	9e-1	38	PsAffx.C58000060_at	PsAffx.C58000060	-	-	6e-1	At5g52060	ATBAG1 (ARABIDOPSIS THALIANA BCL-2-ASSOCIATED ATHANOGENE 1)	C.G.	S.X.	Please select
0.01	9e-1	38	PsAffx.C49000026_at	PsAffx.C49000026	-	-	2e-3	At4g17620	glycine-rich protein	C.G.	S.X.	Please select
0.00	9e-1	38	PsAffx.C30000078_at	PsAffx.C30000078	-	-	7e-1	At2g35260	unknown protein	C.G.	S.X.	Please select

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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF	Ev	BS	Species	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.01	7e-1	38	Arabidopsis thaliana	At4g11300	826732	unknown protein	F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PBMO	-	-	-	C.G.	S.X.	Please selectath TAIR (integral)ath,osa KEGG (integral)ath PlantTribes (integral)ath,osa Gramene (integral)ath MPSS (genome)ath InParanoid (ortholog)ath Plant RBP (ortholog)ath SIGnAL (T-DNA)ath RAFL (full-length clone)ath AtGDB (genome)ath Genevestigator (expression)ath,ptr eFP Browser (expression)ath AVT (expression)ath ATTED-II (co-expression)ath AtcisDB (cis-element)ath SUBA (hydropathy)ath AtProteomeath Plant Proteome Databaseath PMN (pathway)ath,osa KaPPA-View 4 (pathway)ath RnR (over-expression)ath iHOP (report)
0.01	8e-2	40	Hordeum vulgare	Contig15919_at	Contig15919	-	-	2e+0	At5g06839	bZIP family transcription factor	C.G.	S.X.	Please select
0.01	9e-2	42	Oryza sativa	Os06g0590500	AK107080.1	-	Syntaxin 121 (AtSYP121) (Syntaxin-related proteinAt-Syr1)	2e-4	At4g03330	SYP123 (SYNTAXIN OF PLANTS 123)	C.G.	S.X.	Please selectath,osa KEGG (integral)ath,osa Gramene (integral)ath,osa KaPPA-View 4 (pathway)
0.01	6e-2	42	Populus trichocarpa	PtpAffx.101597.1.A1_at	CV258575	hypothetical protein	-	1e-10	At5g53570	RabGAP/TBC domain-containing protein	C.G.	S.X.	Please selectath,ptr eFP Browser (expression)
0.01	3e-3	46	Triticum aestivum	Ta.14033.2.S1_at	CA689718	-	-	9e-1	At2g30420	ETC2	C.G.	S.X.	Please select
0.01	8e-1	36	Vitis vinifera	1621439_s_at	CB343781	hypothetical protein LOC100262404	-	6e-3	At1g71520	AP2 domain-containing transcription factor, putative	C.G.	S.X.	Please select
0.01	3e-1	38	Zea mays	Zm.13110.2.S1_at	AI664859	Hypothetical protein LOC100193124	-	3e+0	At4g18510	CLE2 (CLAVATA3/ESR-RELATED)	C.G.	S.X.	Please select

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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC	GO ID	Process Name

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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID	Link to Kappa-View	Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID	Link to KEGG PATHWAY	Pathway Name

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