Gene omics information

Query gene ID	PsAffx.C34000019_at
Gene name
Organism	Glycine max

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF	%ile	Gene/Probe ID	Repr.ID	Gene Name	Functional Description	Ev	AGI code	Arabidopsis gene name	S.X.	H.G.	Other DB
0.91	98.6	PsAffx.C34000019_at	PsAffx.C34000019	-	-	3e-1	At3g60280	UCC3 (UCLACYANIN 3)	S.X.	H.G.	Please select
0.27	35.7	PsAffx.C59000014_at	PsAffx.C59000014	-	-	1e-1	At5g53910	(S)-2-hydroxy-acid oxidase, peroxisomal, putative / glycolate oxidase, putative / short chain alpha-hydroxy acid oxidase, putative	S.X.	H.G.	Please select
0.23	29.9	PsAffx.psZG005xN22f_s_at	PsAffx.psZG005xN22f	-	-	9e+0	At5g14602	unknown protein	S.X.	H.G.	Please select
0.16	19.7	PsAffx.C123000031_at	PsAffx.C123000031	-	-	2e+0	At4g22930	PYR4 (PYRIMIDIN 4)	S.X.	H.G.	Please select
0.05	8.0	HgAffx.18004.1.S1_at	CB279764	-	-	2e+0	At4g13000	protein kinase family protein	S.X.	H.G.	Please select
0.00	1.4	GmaAffx.83815.1.S1_s_at	BG404904	-	-	1e+0	At1g04330	unknown protein	S.X.	H.G.	Please select

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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.

Std2 GX	%ile	GSM ID	Assay Name	GSE ID	Experiment Title
91.8	100.0	GSM292923	95_1465.1L.R283L, Experimental replicate 1	GSE11611	Combined gene expression and QTL analysis of soybean quantitative resistance to Phytophthora sojae
29.9	99.8	GSM308556	Mature Soybean (Glycine max) pollen grains replicate 1	GSE12286	Genomic Expression Profiling of Mature Soybean (Glycine max) Pollen
20.3	99.7	GSM292198	5_C008.1A.V7A2P, Experimental replicate 1	GSE11611	Combined gene expression and QTL analysis of soybean quantitative resistance to Phytophthora sojae
18.7	99.7	GSM292222	16_C029.1B.R9B2U, Experimental replicate 1	GSE11611	Combined gene expression and QTL analysis of soybean quantitative resistance to Phytophthora sojae
17.6	99.7	GSM292886	61_1483.1L.R292U, Experimental replicate 1	GSE11611	Combined gene expression and QTL analysis of soybean quantitative resistance to Phytophthora sojae
14.7	99.6	GSM244802	16_SLO.I5L2.CEL, Experimental replicate 2	GSE9687	Expression patterns in time and space during P.sojae infection of soybean cultivars differing in quantitative resistance
13.2	99.5	GSM171710	6_V.L.M.5, Experimental replicate V	GSE7124	Plant and pathogen gene expression during infection by P.sojae of 8 soybean cultivars varying in quantitative resistance
11.1	99.4	GSM147956	Laser capture microdissected (LCM) outer integument at the globular stage, biological replicate 3	GSE6414	Expression data from soybean seed compartments with embryos at the globular stage
10.8	99.4	GSM171694	32_V.L.M.3, Experimental replicate V	GSE7124	Plant and pathogen gene expression during infection by P.sojae of 8 soybean cultivars varying in quantitative resistance
10.7	99.4	GSM292831	11_1465.1L.R283U, Experimental replicate 1	GSE11611	Combined gene expression and QTL analysis of soybean quantitative resistance to Phytophthora sojae

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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF	Ev	BS	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.27	8e-126	450	PsAffx.C108000030_at	PsAffx.C108000030	-	-	2e+0	At5g15200	40S ribosomal protein S9 (RPS9B)	C.G.	S.X.	Please select
0.27	8e-126	450	PsAffx.C108000030_s_at	PsAffx.C108000030	-	-	2e+0	At5g15200	40S ribosomal protein S9 (RPS9B)	C.G.	S.X.	Please select
0.16	8e-18	91	PsAffx.CL2499Contig1_at	PsAffx.CL2499Contig1	-	-	2e-1	At4g22810	DNA-binding protein-related	C.G.	S.X.	Please select
0.01	4e-1	36	PsAffx.C57000024_at	PsAffx.C57000024	-	-	3e-1	At2g22480	PFK5 (PHOSPHOFRUCTOKINASE 5)	C.G.	S.X.	Please select
0.01	4e-1	36	PsAffx.C54000071_at	PsAffx.C54000071	-	-	3e+0	At5g48980	kelch repeat-containing F-box family protein	C.G.	S.X.	Please select
0.01	4e-1	36	PsAffx.C54000009_at	PsAffx.C54000009	-	-	3e-1	At5g02220	unknown protein	C.G.	S.X.	Please select
0.01	4e-1	36	PsAffx.C4000110_at	PsAffx.C4000110	-	-	6e+0	At5g42200	zinc finger (C3HC4-type RING finger) family protein	C.G.	S.X.	Please select
0.04	2e+0	34	PsAffx.psMA016xG14f_at	PsAffx.psMA016xG14f	-	-	4e+0	At5g40620	unknown protein	C.G.	S.X.	Please select
0.02	2e+0	34	PsAffx.C31000025_at	PsAffx.C31000025	-	-	3e-2	At4g26860	pyridoxal phosphate binding	C.G.	S.X.	Please select

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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF	Ev	BS	Species	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.04	3e-1	36	Arabidopsis thaliana	At3g60280	825199	UCC3 (UCLACYANIN 3)	Encodes blue copper-binding protein III.	-	-	-	C.G.	S.X.	Please selectath TAIR (integral)ath,osa KEGG (integral)ath PlantTribes (integral)ath,osa Gramene (integral)ath MPSS (genome)ath InParanoid (ortholog)ath Plant RBP (ortholog)ath SIGnAL (T-DNA)ath RAFL (full-length clone)ath AtGDB (genome)ath Genevestigator (expression)ath,ptr eFP Browser (expression)ath AVT (expression)ath ATTED-II (co-expression)ath AtcisDB (cis-element)ath SUBA (hydropathy)ath AtProteomeath Plant Proteome Databaseath PMN (pathway)ath,osa KaPPA-View 4 (pathway)ath RnR (over-expression)ath iHOP (report)
0.03	5e-1	34	Hordeum vulgare	HS06F14u_s_at	HS06F14u	-	-	3e-1	At1g54630	ACP3 (ACYL CARRIER PROTEIN 3)	C.G.	S.X.	Please select
0.04	2e+0	34	Oryza sativa	OsAffx.26203.1.S1_at	-	-	-	0			C.G.	S.X.	Please selectath,osa KEGG (integral)ath,osa Gramene (integral)ath,osa KaPPA-View 4 (pathway)
0.04	2e+0	34	Populus trichocarpa	Ptp.6178.1.S1_a_at	CV227973	hypothetical protein	-	6e-31	At1g21065	unknown protein	C.G.	S.X.	Please selectath,ptr eFP Browser (expression)
0.03	1e+0	34	Triticum aestivum	Ta.25318.2.S1_at	BJ269085	-	-	4e+0	At4g14600	-	C.G.	S.X.	Please select
0.03	3e-1	34	Vitis vinifera	1617880_at	CB921486	hypothetical protein LOC100242119	-	2e-2	At1g29410	PAI3 (phosphoribosylanthranilate isomerase 3)	C.G.	S.X.	Please select
0.03	5e-1	34	Zea mays	Zm.9414.1.A1_at	BM337964	-	-	1e+0	At2g46320	mitochondrial substrate carrier family protein	C.G.	S.X.	Please select

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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC	GO ID	Process Name

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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID	Link to Kappa-View	Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID	Link to KEGG PATHWAY	Pathway Name

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