Gene omics information

Query gene ID PsAffx.C25000032_at
Gene name
Organism Glycine max


Co-expressed genes



As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF%ileGene/Probe IDRepr.IDGene NameFunctional DescriptionEvAGI codeArabidopsis gene nameS.X.H.G.Other DB
0.9198.6PsAffx.C25000032_atPsAffx.C25000032--2e-1At5g10140FLC (FLOWERING LOCUS C)S.X.H.G.
0.3650.8Gma.5793.4.S1_x_atBI967780--8e-19At3g61430PIP1A (PLASMA MEMBRANE INTRINSIC PROTEIN 1A)S.X.H.G.
0.2735.7GmaAffx.92103.1.S1_s_atCF806493translationally controlled tumor-like protein-6e-28At3g16640TCTP (TRANSLATIONALLY CONTROLLED TUMOR PROTEIN)S.X.H.G.
0.2126.6PsAffx.C167000011_atPsAffx.C167000011--3e-1At3g05760nucleic acid binding / zinc ion bindingS.X.H.G.
0.1721.2GmaAffx.99.2.A1_s_atBE330213Translationally controlled tumor-like protein-3e-1At3g26670-S.X.H.G.
0.0912.0GmaAffx.92838.1.S1_s_atCF806809hydroxyproline-rich glycoprotein-3e-2At1g23720proline-rich extensin-like family proteinS.X.H.G.
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Specifically expressed experiments



As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX%ileGSM IDAssay NameGSE IDExperiment Title
41.399.9GSM29364168_2065.2B.R129U, Experimental replicate 2GSE11611Combined gene expression and QTL analysis of soybean quantitative resistance to Phytophthora sojae
13.599.5GSM201099Laser capture microdissected (LCM) axis plumule at the early maturation stage, biological replicate 2GSE8112Expression data from soybean seed compartments with embryos at the early maturation stage
12.399.5GSM24487532_CON.M1W3.CEL, Experimental replicate 3GSE9687Expression patterns in time and space during P.sojae infection of soybean cultivars differing in quantitative resistance
12.099.4GSM1717034_W.E.I.5, Experimental replicate WGSE7124Plant and pathogen gene expression during infection by P.sojae of 8 soybean cultivars varying in quantitative resistance
11.799.4GSM29285432_C203.1L.SLL1L, Experimental replicate 1GSE11611Combined gene expression and QTL analysis of soybean quantitative resistance to Phytophthora sojae
11.199.4GSM308560Mature Soybean (Glycine max) pollen grains Replicate 3GSE12286Genomic Expression Profiling of Mature Soybean (Glycine max) Pollen
10.699.3GSM191089Soybean_Cotyledon_OI1GSE7881Expression data from soybean seed compartments with embryos at the cotyledon stage
9.699.2GSM29229239_C075.1E.R9E1L, Experimental replicate 1GSE11611Combined gene expression and QTL analysis of soybean quantitative resistance to Phytophthora sojae
9.599.2GSM29236435_C097.1F.SLF2L, Experimental replicate 1GSE11611Combined gene expression and QTL analysis of soybean quantitative resistance to Phytophthora sojae
9.299.2GSM1717157_W.K.M.3, Experimental replicate WGSE7124Plant and pathogen gene expression during infection by P.sojae of 8 soybean cultivars varying in quantitative resistance
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Homologous genes



Paralogous genes



Click Gene ID to show a list of homologous genes.

HFEvBSGene IDRepr. IDGene NameFunctional descriptionEvAGI codeArabidopsis gene nameC.G.S.X.Other DB
0.033e-136GmaAffx.21590.1.S1_atBE058846--2e-2At5g25160ZFP3 (ZINC FINGER PROTEIN 3)C.G.S.X.
0.031e+034PsAffx.CL2128Contig1_atPsAffx.CL2128Contig1--1e+0At5g42530unknown proteinC.G.S.X.
0.011e+034PsAffx.C8000117_atPsAffx.C8000117--1e-2At5g03450zinc finger (C3HC4-type RING finger) family proteinC.G.S.X.
0.011e+034PsAffx.C35000058_atPsAffx.C35000058--8e-1At3g22400LOX5C.G.S.X.
0.021e+034PsAffx.C299000005_atPsAffx.C299000005--6e-1At3g02540RAD23-3 (PUTATIVE DNA REPAIR PROTEIN RAD23-3)C.G.S.X.
0.011e+034PsAffx.C175000037_atPsAffx.C175000037--4e+0At2g21990unknown proteinC.G.S.X.
0.011e+034PsAffx.C134000043_atPsAffx.C134000043--1e+0At1g68430unknown proteinC.G.S.X.
0.011e+034PsAffx.C128000026_s_atPsAffx.C128000026--5e-1At5g59950RNA and export factor-binding protein, putativeC.G.S.X.
0.041e+034HgAffx.23901.1.S1_atBF013948--3e+0At2g16860GCIP-interacting family proteinC.G.S.X.
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Orthologous genes



Click Gene ID to show a list of orthologous genes.

HFEvBSSpeciesGene IDRepr. IDGene NameFunctional descriptionEvAGI codeArabidopsis gene nameC.G.S.X.Other DB
0.042e-136Arabidopsis thalianaAt5g10140830878FLC (FLOWERING LOCUS C)MADS-box protein encoded by FLOWERING LOCUS C - transcription factor that functions as a repressor of floral transition and contributes to temperature compensation of the circadian clock. Expression is downregulated during cold treatment. Vernalization, FRI and the autonomous pathway all influence the state of FLC chromatin. Both maternal and paternal alleles are reset by vernalization, but their earliest activation differs in timing and location. Histone H3 trimethylation at lysine 4 and histone acetylation are associated with active FLC expression, whereas histone deacetylation and histone H3 dimethylation at lysines 9 and 27 are involved in FLC repression. Expression is also repressed by two small RNAs (30- and 24-nt) complementary to the FLC sense strand 3 to the polyA site. The small RNAs are most likely derived from an antisense transcript of FLC. Interacts with SOC1 and FT chromatin in vivo. Member of a protein complex.---C.G.S.X.
0.045e-134Hordeum vulgareContig24613_atContig24613--2e-2At5g57820protein binding / zinc ion bindingC.G.S.X.
0.042e+034Oryza sativaOsAffx.15250.1.S1_at---0C.G.S.X.
0.041e+034Populus trichocarpaPtpAffx.208267.1.S1_atpmrna16451hypothetical protein-2e+0At5g15530BCCP2 (BIOTIN CARBOXYL CARRIER PROTEIN 2)C.G.S.X.
0.044e+032Triticum aestivumTaAffx.29213.1.S1_atCA647938--3e+0At5g06480MD-2-related lipid recognition domain-containing protein / ML domain-containing proteinC.G.S.X.
0.035e+030Vitis vinifera1612974_atCF513889--3e-4At3g20890RNA binding / nucleic acid binding / nucleotide bindingC.G.S.X.
0.042e+032Zea maysZmAffx.1033.1.A1_atAI881710--8e-1At1g12064unknown proteinC.G.S.X.
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Biological processes



Click GO ID to show a list of genes that are associated with the GO ID.

ECCGO IDProcess Name
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Metabolic pathways



Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View IDLink to Kappa-ViewPathway Name



Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY IDLink to KEGG PATHWAYPathway Name
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