Gene omics information

Query gene ID	PsAffx.C213000010_at
Gene name
Organism	Glycine max

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF	%ile	Gene/Probe ID	Repr.ID	Gene Name	Functional Description	Ev	AGI code	Arabidopsis gene name	S.X.	H.G.	Other DB
0.91	98.6	PsAffx.C213000010_at	PsAffx.C213000010	-	-	1e+0	At4g31150	endonuclease V family protein	S.X.	H.G.	Please select
0.53	74.2	PsAffx.C33000102_at	PsAffx.C33000102	-	-	8e+0	At5g60090	protein kinase family protein	S.X.	H.G.	Please select
0.44	63.3	PsAffx.C145000027_at	PsAffx.C145000027	-	-	1e+0	At3g28220	meprin and TRAF homology domain-containing protein / MATH domain-containing protein	S.X.	H.G.	Please select
0.40	57.1	PsAffx.C8000052_at	PsAffx.C8000052	-	-	4e-1	At2g15280	reticulon family protein (RTNLB10)	S.X.	H.G.	Please select
0.09	12.0	PsAffx.psZG005xN22f_s_at	PsAffx.psZG005xN22f	-	-	9e+0	At5g14602	unknown protein	S.X.	H.G.	Please select
0.03	5.8	PsAffx.C13000087_at	PsAffx.C13000087	-	-	4e-1	At4g01985	unknown protein	S.X.	H.G.	Please select

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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.

Std2 GX	%ile	GSM ID	Assay Name	GSE ID	Experiment Title
199.0	100.0	GSM182032	Laser capture microdissected (LCM) suspensor at the heart stage, biological replicate 1	GSE7511	Expression data from soybean seed compartments with embryos at the heart stage
111.9	100.0	GSM292923	95_1465.1L.R283L, Experimental replicate 1	GSE11611	Combined gene expression and QTL analysis of soybean quantitative resistance to Phytophthora sojae
88.5	100.0	GSM293247	34_C066.1P.R9P2P, Experimental replicate 1	GSE11611	Combined gene expression and QTL analysis of soybean quantitative resistance to Phytophthora sojae
85.1	100.0	GSM293316	97_1538.1P.R044P, Experimental replicate 1	GSE11611	Combined gene expression and QTL analysis of soybean quantitative resistance to Phytophthora sojae
73.6	100.0	GSM292158	10_C010.1A.R9A2P, Experimental replicate 1	GSE11611	Combined gene expression and QTL analysis of soybean quantitative resistance to Phytophthora sojae
63.3	99.9	GSM293584	16_2089.2B.R181U, Experimental replicate 2	GSE11611	Combined gene expression and QTL analysis of soybean quantitative resistance to Phytophthora sojae
61.3	99.9	GSM293112	27_C047.1O.R9O2U, Experimental replicate 1	GSE11611	Combined gene expression and QTL analysis of soybean quantitative resistance to Phytophthora sojae
60.6	99.9	GSM182044	Laser capture microdissected (LCM) inner integument at the heart stage, biological replicate 2	GSE7511	Expression data from soybean seed compartments with embryos at the heart stage
49.7	99.9	GSM147947	Laser capture microdissected (LCM) epidermis at the globular stage, biological replicate 3	GSE6414	Expression data from soybean seed compartments with embryos at the globular stage
47.0	99.9	GSM238038	Soybean-Bayfield-2-RMA	GSE9374	Exploration of microarrays as tools to assess substantial equivalence of genetically modified soybeans

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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF	Ev	BS	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.02	3e-2	42	GmaAffx.19934.1.S1_at	BU764072	-	-	3e+0	At4g16030	structural constituent of ribosome	C.G.	S.X.	Please select
0.01	1e-1	40	PsAffx.psMA009xD06f_at	PsAffx.psMA009xD06f	-	-	1e+0	At1g62780	unknown protein	C.G.	S.X.	Please select
0.01	1e-1	40	PsAffx.C58000037_at	PsAffx.C58000037	-	-	4e+0	At4g15150	glycine-rich protein	C.G.	S.X.	Please select
0.01	5e-1	38	PsAffx.C17000134_at	PsAffx.C17000134	-	-	3e-1	At2g42390	protein kinase C substrate, heavy chain-related	C.G.	S.X.	Please select
0.01	2e+0	36	PsAffx.C83000043_at	PsAffx.C83000043	-	-	6e+0	At1g60000	29 kDa ribonucleoprotein, chloroplast, putative / RNA-binding protein cp29, putative	C.G.	S.X.	Please select
0.01	2e+0	36	PsAffx.C7000163_at	PsAffx.C7000163	-	-	7e-1	At5g09610	APUM21 (Arabidopsis Pumilio 21)	C.G.	S.X.	Please select
0.01	2e+0	36	PsAffx.C2000271_at	PsAffx.C2000271	-	-	6e-4	At4g28160	hydroxyproline-rich glycoprotein family protein	C.G.	S.X.	Please select
0.01	2e+0	36	PsAffx.C116000039_at	PsAffx.C116000039	-	-	4e-2	At1g68725	AGP19 (ARABINOGALACTAN-PROTEIN 19)	C.G.	S.X.	Please select
0.01	2e+0	36	GmaAffx.24396.1.A1_at	BU547464	-	-	1e-16	At3g55260	HEXO1 (BETA-HEXOSAMINIDASE 1)	C.G.	S.X.	Please select

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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF	Ev	BS	Species	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.01	1e+0	36	Arabidopsis thaliana	At4g31150	829243	endonuclease V family protein	F:endonuclease activity;P:DNA repair;C:cellular_component unknown;BAOMPF	-	-	-	C.G.	S.X.	Please selectath TAIR (integral)ath,osa KEGG (integral)ath PlantTribes (integral)ath,osa Gramene (integral)ath MPSS (genome)ath InParanoid (ortholog)ath Plant RBP (ortholog)ath SIGnAL (T-DNA)ath RAFL (full-length clone)ath AtGDB (genome)ath Genevestigator (expression)ath,ptr eFP Browser (expression)ath AVT (expression)ath ATTED-II (co-expression)ath AtcisDB (cis-element)ath SUBA (hydropathy)ath AtProteomeath Plant Proteome Databaseath PMN (pathway)ath,osa KaPPA-View 4 (pathway)ath RnR (over-expression)ath iHOP (report)
0.01	6e-1	36	Hordeum vulgare	HU12N06u_x_at	HU12N06u	-	-	5e-1	At1g29962	AGL64 (AGAMOUS-LIKE 64)	C.G.	S.X.	Please select
0.02	3e-6	56	Oryza sativa	Os.55905.1.S1_at	-	-	-	0			C.G.	S.X.	Please selectath,osa KEGG (integral)ath,osa Gramene (integral)ath,osa KaPPA-View 4 (pathway)
0.02	5e-1	38	Populus trichocarpa	PtpAffx.23095.1.S1_at	CX177404	hypothetical protein	-	1e-3	At3g02540	RAD23-3 (PUTATIVE DNA REPAIR PROTEIN RAD23-3)	C.G.	S.X.	Please selectath,ptr eFP Browser (expression)
0.01	5e+0	34	Triticum aestivum	Ta.7106.1.S1_at	BJ315484	-	-	2e+0	At3g44230	unknown protein	C.G.	S.X.	Please select
0.01	1e-1	38	Vitis vinifera	1617136_s_at	CF214297	hypothetical protein LOC100246159	-	2e-58	At4g16720	60S ribosomal protein L15 (RPL15A)	C.G.	S.X.	Please select
0.01	9e+0	32	Zea mays	ZmAffx.150.1.A1_at	AI667840	hypothetical protein LOC100193164	-	1e+1	At5g52605	-	C.G.	S.X.	Please select

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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC	GO ID	Process Name

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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID	Link to Kappa-View	Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID	Link to KEGG PATHWAY	Pathway Name

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