Gene omics information

Query gene ID	PsAffx.C202000014_at
Gene name
Organism	Glycine max

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF	%ile	Gene/Probe ID	Repr.ID	Gene Name	Functional Description	Ev	AGI code	Arabidopsis gene name	S.X.	H.G.	Other DB
0.91	98.6	PsAffx.C202000014_at	PsAffx.C202000014	-	-	5e-1	At3g18518	RTFL20 (ROTUNDIFOLIA LIKE 20)	S.X.	H.G.	Please select
0.80	91.5	PsAffx.CL277Contig1_at	PsAffx.CL277Contig1	-	-	1e-2	At1g64040	TOPP3	S.X.	H.G.	Please select
0.50	71.7	PsAffx.CL460Contig1_at	PsAffx.CL460Contig1	-	-	2e+0	At5g19440	cinnamyl-alcohol dehydrogenase, putative (CAD)	S.X.	H.G.	Please select
0.42	59.3	PsAffx.CL268Contig1_at	PsAffx.CL268Contig1	-	-	6e-9	At5g10980	histone H3	S.X.	H.G.	Please select
0.38	53.3	PsAffx.CL483Contig1_at	PsAffx.CL483Contig1	-	-	8e+0	At4g01670	unknown protein	S.X.	H.G.	Please select
0.33	46.1	PsAffx.CL210Contig1_s_at	PsAffx.CL210Contig1	-	-	5e+0	At3g47490	HNH endonuclease domain-containing protein	S.X.	H.G.	Please select

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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.

Std2 GX	%ile	GSM ID	Assay Name	GSE ID	Experiment Title
111.9	100.0	GSM294303	54_3153.2I.R9I2L, Experimental replicate 2	GSE11611	Combined gene expression and QTL analysis of soybean quantitative resistance to Phytophthora sojae
102.5	100.0	GSM293113	28_C047.1O.R9O2L, Experimental replicate 1	GSE11611	Combined gene expression and QTL analysis of soybean quantitative resistance to Phytophthora sojae
59.1	99.9	GSM244920	5_VP9.I5L2.CEL, Experimental replicate 2	GSE9687	Expression patterns in time and space during P.sojae infection of soybean cultivars differing in quantitative resistance
56.3	99.9	GSM171675	28_W.I.M.5, Experimental replicate W	GSE7124	Plant and pathogen gene expression during infection by P.sojae of 8 soybean cultivars varying in quantitative resistance
54.2	99.9	GSM292384	59_C093.1F.R9F1L, Experimental replicate 1	GSE11611	Combined gene expression and QTL analysis of soybean quantitative resistance to Phytophthora sojae
53.3	99.9	GSM171725	9_Z.F.M.5, Experimental replicate Z	GSE7124	Plant and pathogen gene expression during infection by P.sojae of 8 soybean cultivars varying in quantitative resistance
51.6	99.9	GSM171703	4_W.E.I.5, Experimental replicate W	GSE7124	Plant and pathogen gene expression during infection by P.sojae of 8 soybean cultivars varying in quantitative resistance
47.0	99.9	GSM293641	68_2065.2B.R129U, Experimental replicate 2	GSE11611	Combined gene expression and QTL analysis of soybean quantitative resistance to Phytophthora sojae
45.5	99.9	GSM171720	8_Y.E.I.5, Experimental replicate Y	GSE7124	Plant and pathogen gene expression during infection by P.sojae of 8 soybean cultivars varying in quantitative resistance
44.6	99.9	GSM171680	29_Y.F.M.5, Experimental replicate Y	GSE7124	Plant and pathogen gene expression during infection by P.sojae of 8 soybean cultivars varying in quantitative resistance

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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF	Ev	BS	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.07	8e-13	75	PsAffx.CL293Contig1_at	PsAffx.CL293Contig1	-	-	2e+0	At3g27070	TOM20-1 (translocase outer membrane 20-1)	C.G.	S.X.	Please select
0.02	3e-3	44	PsAffx.C15000130_at	PsAffx.C15000130	-	-	2e+1	At5g17450	heavy-metal-associated domain-containing protein / copper chaperone (CCH)-related	C.G.	S.X.	Please select
0.02	4e-2	40	PsAffx.psHB027xI10f_s_at	PsAffx.psHB027xI10f	-	-	3e-1	At5g47700	60S acidic ribosomal protein P1 (RPP1C)	C.G.	S.X.	Please select
0.01	4e-2	40	PsAffx.C72000045_at	PsAffx.C72000045	-	-	1e-3	At3g22820	allergen-related	C.G.	S.X.	Please select
0.01	4e-2	40	PsAffx.C66000047_at	PsAffx.C66000047	-	-	6e+0	At5g65030	unknown protein	C.G.	S.X.	Please select
0.02	4e-2	40	PsAffx.C205000031_at	PsAffx.C205000031	-	-	2e+0	At5g59280	APUM16 (Arabidopsis Pumilio 16)	C.G.	S.X.	Please select
0.01	4e-2	40	PsAffx.C21000051_at	PsAffx.C21000051	-	-	2e+0	At5g07520	GRP18 (GLYCINE-RICH PROTEIN 18)	C.G.	S.X.	Please select
0.01	4e-2	40	PsAffx.C1000081_at	PsAffx.C1000081	-	-	8e-1	At5g47700	60S acidic ribosomal protein P1 (RPP1C)	C.G.	S.X.	Please select
0.04	2e-1	38	PsAffx.CL575Contig1_at	PsAffx.CL575Contig1	-	-	5e-1	At1g64490	unknown protein	C.G.	S.X.	Please select

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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF	Ev	BS	Species	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.03	5e-1	36	Arabidopsis thaliana	At3g18518	5008008	RTFL20 (ROTUNDIFOLIA LIKE 20)	Member of a family of small polypeptides found only in angiosperm lineages.Contains a conserved 29 amino acid domain (RTF or DVL domain).	-	-	-	C.G.	S.X.	Please selectath TAIR (integral)ath,osa KEGG (integral)ath PlantTribes (integral)ath,osa Gramene (integral)ath MPSS (genome)ath InParanoid (ortholog)ath Plant RBP (ortholog)ath SIGnAL (T-DNA)ath RAFL (full-length clone)ath AtGDB (genome)ath Genevestigator (expression)ath,ptr eFP Browser (expression)ath AVT (expression)ath ATTED-II (co-expression)ath AtcisDB (cis-element)ath SUBA (hydropathy)ath AtProteomeath Plant Proteome Databaseath PMN (pathway)ath,osa KaPPA-View 4 (pathway)ath RnR (over-expression)ath iHOP (report)
0.03	2e-1	36	Hordeum vulgare	EBem09_SQ006_J23_at	EBem09_SQ006_J23	-	-	8e+0	At5g09240	transcriptional coactivator p15 (PC4) family protein	C.G.	S.X.	Please select
0.02	2e-2	42	Oryza sativa	OsAffx.30076.1.S1_at	-	-	-	0			C.G.	S.X.	Please selectath,osa KEGG (integral)ath,osa Gramene (integral)ath,osa KaPPA-View 4 (pathway)
0.03	2e-1	38	Populus trichocarpa	PtpAffx.223395.1.S1_x_at	pmrna41374	-	-	3e+0	At1g68585	unknown protein	C.G.	S.X.	Please selectath,ptr eFP Browser (expression)
0.03	9e-3	42	Triticum aestivum	TaAffx.58588.1.S1_at	CA618337	-	-	4e-3	At1g22490	basic helix-loop-helix (bHLH) family protein	C.G.	S.X.	Please select
0.03	4e-2	38	Vitis vinifera	1614172_at	CF514056	-	-	4e+0	At4g27280	calcium-binding EF hand family protein	C.G.	S.X.	Please select
0.02	2e-1	36	Zea mays	Zm.17258.1.S1_at	CK369580	-	-	2e-2	At2g36100	integral membrane family protein	C.G.	S.X.	Please select

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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC	GO ID	Process Name

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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID	Link to Kappa-View	Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID	Link to KEGG PATHWAY	Pathway Name

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