Gene omics information

Query gene ID	PsAffx.C2000250_at
Gene name
Organism	Glycine max

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF	%ile	Gene/Probe ID	Repr.ID	Gene Name	Functional Description	Ev	AGI code	Arabidopsis gene name	S.X.	H.G.	Other DB
0.79	90.8	PsAffx.C2000250_at	PsAffx.C2000250	-	-	7e-1	At5g53180	PTB2 (POLYPYRIMIDINE TRACT-BINDING PROTEIN 2)	S.X.	H.G.	Please select
0.90	93.7	HgAffx.3013.1.S1_at	CK349173	-	-	3e-1	At1g66890	-	S.X.	H.G.	Please select
0.90	93.7	HgAffx.17742.1.S1_at	CB278735	-	-	1e+0	At5g05250	unknown protein	S.X.	H.G.	Please select
0.90	93.7	PsAffx.C63000067_at	PsAffx.C63000067	-	-	1e-1	At5g05150	AtATG18e	S.X.	H.G.	Please select
0.90	93.7	PsAffx.C6000193_at	PsAffx.C6000193	-	-	1e+1	Atmg00450	-	S.X.	H.G.	Please select
0.90	93.7	GmaAffx.55284.1.S1_at	BM108343	-	-	3e+0	At5g10390	histone H3	S.X.	H.G.	Please select
0.90	93.7	HgAffx.11003.1.S1_at	CB824101	-	-	4e+0	At3g28630	-	S.X.	H.G.	Please select
0.90	93.7	HgAffx.5776.1.S1_at	CB826435	-	-	1e+0	At5g59030	COPT1 (copper transporter 1)	S.X.	H.G.	Please select
0.88	93.4	PsAffx.C115000050_s_at	PsAffx.C115000050	-	-	2e+0	At5g66490	unknown protein	S.X.	H.G.	Please select
0.87	93.2	PsAffx.C68000072_at	PsAffx.C68000072	-	-	4e+0	At2g41410	calmodulin, putative	S.X.	H.G.	Please select

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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.

Std2 GX	%ile	GSM ID	Assay Name	GSE ID	Experiment Title
988.4	100.0	GSM292923	95_1465.1L.R283L, Experimental replicate 1	GSE11611	Combined gene expression and QTL analysis of soybean quantitative resistance to Phytophthora sojae
66.3	100.0	GSM292448	49_C110.1G.V7G1P, Experimental replicate 1	GSE11611	Combined gene expression and QTL analysis of soybean quantitative resistance to Phytophthora sojae
58.6	99.9	GSM294268	23_2428.2I.R297P, Experimental replicate 2	GSE11611	Combined gene expression and QTL analysis of soybean quantitative resistance to Phytophthora sojae
41.5	99.9	GSM293082	81_C019.1N.R9N1U, Experimental replicate 1	GSE11611	Combined gene expression and QTL analysis of soybean quantitative resistance to Phytophthora sojae
40.8	99.9	GSM209579	susceptible_24hours_rep1 *failed QC*	GSE8432	Expression survey of Rpp1 soybean line PI200492 resistant to P. pachyrhizi
35.4	99.9	GSM238057	Soybean-S03W4-1-RMA	GSE9374	Exploration of microarrays as tools to assess substantial equivalence of genetically modified soybeans
33.5	99.9	GSM293284	68_1533.1P.R026L, Experimental replicate 1	GSE11611	Combined gene expression and QTL analysis of soybean quantitative resistance to Phytophthora sojae
30.9	99.9	GSM171703	4_W.E.I.5, Experimental replicate W	GSE7124	Plant and pathogen gene expression during infection by P.sojae of 8 soybean cultivars varying in quantitative resistance
30.2	99.8	GSM293641	68_2065.2B.R129U, Experimental replicate 2	GSE11611	Combined gene expression and QTL analysis of soybean quantitative resistance to Phytophthora sojae
26.7	99.8	GSM171693	31_Z.I.M.5, Experimental replicate Z	GSE7124	Plant and pathogen gene expression during infection by P.sojae of 8 soybean cultivars varying in quantitative resistance

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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF	Ev	BS	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.02	4e-3	44	PsAffx.C71000032_at	PsAffx.C71000032	-	-	6e-2	At5g37550	unknown protein	C.G.	S.X.	Please select
0.03	4e-3	44	PsAffx.C60000040_at	PsAffx.C60000040	-	-	2e+0	At2g30590	WRKY21	C.G.	S.X.	Please select
0.03	4e-3	44	PsAffx.C222000013_at	PsAffx.C222000013	-	-	1e+0	At3g50460	HR2 (HOMOLOG OF RPW8 2)	C.G.	S.X.	Please select
0.01	1e-2	42	PsAffx.C83000032_at	PsAffx.C83000032	-	-	6e-2	At3g54920	PMR6 (powdery mildew resistant 6)	C.G.	S.X.	Please select
0.02	1e-2	42	HgAffx.8577.1.S1_at	CB379924	-	-	3e-1	At3g15480	unknown protein	C.G.	S.X.	Please select
0.01	6e-2	40	PsAffx.CL165Contig1_at	PsAffx.CL165Contig1	-	-	4e+0	At4g36460	unknown protein	C.G.	S.X.	Please select
0.01	6e-2	40	PsAffx.C5000114_at	PsAffx.C5000114	-	-	1e-4	At1g56170	NF-YC2 (NUCLEAR FACTOR Y, SUBUNIT C2)	C.G.	S.X.	Please select
0.02	6e-2	40	PsAffx.C4000146_at	PsAffx.C4000146	-	-	1e-1	At1g71730	unknown protein	C.G.	S.X.	Please select
0.01	6e-2	40	PsAffx.C256000008_at	PsAffx.C256000008	-	-	7e-2	At1g65342	unknown protein	C.G.	S.X.	Please select

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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF	Ev	BS	Species	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.02	7e-1	36	Arabidopsis thaliana	At5g53180	835399	PTB2 (POLYPYRIMIDINE TRACT-BINDING PROTEIN 2)	Encodes one of the two polypyrimidine tract-binding (PTB) protein homologs in the Arabidopsis genome. Double mutants have defects in pollen germination.	-	-	-	C.G.	S.X.	Please selectath TAIR (integral)ath,osa KEGG (integral)ath PlantTribes (integral)ath,osa Gramene (integral)ath MPSS (genome)ath InParanoid (ortholog)ath Plant RBP (ortholog)ath SIGnAL (T-DNA)ath RAFL (full-length clone)ath AtGDB (genome)ath Genevestigator (expression)ath,ptr eFP Browser (expression)ath AVT (expression)ath ATTED-II (co-expression)ath AtcisDB (cis-element)ath SUBA (hydropathy)ath AtProteomeath Plant Proteome Databaseath PMN (pathway)ath,osa KaPPA-View 4 (pathway)ath RnR (over-expression)ath iHOP (report)
0.03	3e-1	36	Hordeum vulgare	Contig12181_at	Contig12181	-	-	1e-1	At1g30660	nucleic acid binding	C.G.	S.X.	Please select
0.03	3e-1	38	Oryza sativa	Os06g0497500	9634.m02904	-	-	3e+0	At3g21890	zinc finger (B-box type) family protein	C.G.	S.X.	Please selectath,osa KEGG (integral)ath,osa Gramene (integral)ath,osa KaPPA-View 4 (pathway)
0.03	2e-1	38	Populus trichocarpa	PtpAffx.8857.3.S1_at	BP928835	hypothetical protein	-	3e-1	At5g40660	ATP12 protein-related	C.G.	S.X.	Please selectath,ptr eFP Browser (expression)
0.03	4e-2	40	Triticum aestivum	Ta.30755.2.S1_x_at	CA702464	-	-	1e+0	At5g39170	unknown protein	C.G.	S.X.	Please select
0.02	2e-1	36	Vitis vinifera	1612879_at	BQ792341	hypothetical protein LOC100260024	-	2e+0	At5g02060	integral membrane protein, putative	C.G.	S.X.	Please select
0.03	5e-3	42	Zea mays	Zm.15542.1.S1_at	CD219383	-	-	2e-2	At4g29080	PAP2 (PHYTOCHROME-ASSOCIATED PROTEIN 2)	C.G.	S.X.	Please select

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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC	GO ID	Process Name

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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID	Link to Kappa-View	Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID	Link to KEGG PATHWAY	Pathway Name

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