Gene omics information

Query gene ID PsAffx.C193000004_at
Gene name
Organism Glycine max


Co-expressed genes



As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF%ileGene/Probe IDRepr.IDGene NameFunctional DescriptionEvAGI codeArabidopsis gene nameS.X.H.G.Other DB
0.9198.6PsAffx.C193000004_atPsAffx.C193000004--7e-1At3g63410APG1 (ALBINO OR PALE GREEN MUTANT 1)S.X.H.G.
0.5071.7PsAffx.CL1340Contig1_atPsAffx.CL1340Contig1--2e+0At1g71790F-actin capping protein beta subunit family proteinS.X.H.G.
0.1518.7PsAffx.CL716Contig1_atPsAffx.CL716Contig1--2e+0At3g01020ISU2 (ISCU-LIKE 2)S.X.H.G.
0.1417.5GmaAffx.30928.1.S1_s_atBE583905--2e-1At3g06545unknown proteinS.X.H.G.
0.1215.1PsAffx.CL1100Contig1_atPsAffx.CL1100Contig1--7e-2At1g54110cation exchanger, putative (CAX10)S.X.H.G.
0.035.8PsAffx.psHB008xL07f_atPsAffx.psHB008xL07f--3e+0At3g43160MEE38 (maternal effect embryo arrest 38)S.X.H.G.
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Specifically expressed experiments



As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX%ileGSM IDAssay NameGSE IDExperiment Title
90.1100.0GSM17167528_W.I.M.5, Experimental replicate WGSE7124Plant and pathogen gene expression during infection by P.sojae of 8 soybean cultivars varying in quantitative resistance
78.4100.0GSM1717208_Y.E.I.5, Experimental replicate YGSE7124Plant and pathogen gene expression during infection by P.sojae of 8 soybean cultivars varying in quantitative resistance
77.6100.0GSM29430354_3153.2I.R9I2L, Experimental replicate 2GSE11611Combined gene expression and QTL analysis of soybean quantitative resistance to Phytophthora sojae
75.8100.0GSM1717034_W.E.I.5, Experimental replicate WGSE7124Plant and pathogen gene expression during infection by P.sojae of 8 soybean cultivars varying in quantitative resistance
59.199.9GSM29426220_2405.2I.R084L, Experimental replicate 2GSE11611Combined gene expression and QTL analysis of soybean quantitative resistance to Phytophthora sojae
46.599.9GSM17161915_W.F.M.5, Experimental replicate WGSE7124Plant and pathogen gene expression during infection by P.sojae of 8 soybean cultivars varying in quantitative resistance
43.399.9GSM17168029_Y.F.M.5, Experimental replicate YGSE7124Plant and pathogen gene expression during infection by P.sojae of 8 soybean cultivars varying in quantitative resistance
40.999.9GSM1717259_Z.F.M.5, Experimental replicate ZGSE7124Plant and pathogen gene expression during infection by P.sojae of 8 soybean cultivars varying in quantitative resistance
40.199.9GSM17167728_Z.E.M.5, Experimental replicate ZGSE7124Plant and pathogen gene expression during infection by P.sojae of 8 soybean cultivars varying in quantitative resistance
34.799.9GSM17166425_Y.E.M.5, Experimental replicate YGSE7124Plant and pathogen gene expression during infection by P.sojae of 8 soybean cultivars varying in quantitative resistance
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Homologous genes



Paralogous genes



Click Gene ID to show a list of homologous genes.

HFEvBSGene IDRepr. IDGene NameFunctional descriptionEvAGI codeArabidopsis gene nameC.G.S.X.Other DB
0.086e-27123PsAffx.CL1438Contig1_atPsAffx.CL1438Contig1--4e-2At5g62090-C.G.S.X.
0.078e-1479PsAffx.C9000051_atPsAffx.C9000051--2e+0At5g23950C2 domain-containing proteinC.G.S.X.
0.041e-1275PsAffx.C9000054_s_atPsAffx.C9000054--4e-1At3g52860unknown proteinC.G.S.X.
0.087e-1169PsAffx.C9000033_atPsAffx.C9000033--2e+0At2g47580U1A (SPLICEOSOMAL PROTEIN U1A)C.G.S.X.
0.107e-1169PsAffx.C50000085_atPsAffx.C50000085--6e+0At4g27800protein phosphatase 2C PPH1 / PP2C PPH1 (PPH1)C.G.S.X.
0.032e-861PsAffx.C15000033_atPsAffx.C15000033--2e+0At4g00100ATRPS13A (ARABIDOPSIS THALIANA RIBOSOMAL PROTEIN S13A)C.G.S.X.
0.047e-859PsAffx.C15000047_atPsAffx.C15000047--1e+0Atmg01100-C.G.S.X.
0.043e-757PsAffx.C15000125_atPsAffx.C15000125--8e+0At5g23680sterile alpha motif (SAM) domain-containing proteinC.G.S.X.
0.061e-656PsAffx.C17000057_atPsAffx.C17000057--5e+0At5g07330unknown proteinC.G.S.X.
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Orthologous genes



Click Gene ID to show a list of orthologous genes.

HFEvBSSpeciesGene IDRepr. IDGene NameFunctional descriptionEvAGI codeArabidopsis gene nameC.G.S.X.Other DB
0.017e-136Arabidopsis thalianaAt3g63410825516APG1 (ALBINO OR PALE GREEN MUTANT 1)Encodes a MPBQ/MSBQ methyltransferase located in the chloroplast inner envelope membrane. Mutant plants lack plastoquinone (PQ), suggesting that the APG1 protein is involved in the methylation step of PQ biosynthesis. The gene product is also involved in tocopherol (vitamin E) biosynthesis.---C.G.S.X.
0.022e-240Hordeum vulgareContig6677_s_atContig6677--1e-1At5g17510unknown proteinC.G.S.X.
0.052e-242Oryza sativaOs01g0156000AK106969.1-CCA1 (MYB-related transcription factor (CCA1)supported by cDNA: gi:1777442) (MYB transcription factor)4e-5At1g01520myb family transcription factorC.G.S.X.
0.026e-240Populus trichocarpaPtpAffx.139172.2.S1_s_atCV252129hypothetical protein-2e-5At3g59690IQD13 (IQ-domain 13)C.G.S.X.
0.025e-240Triticum aestivumTaAffx.113774.2.S1_atCA618657--9e-23At5g0709040S ribosomal protein S4 (RPS4B)C.G.S.X.
0.025e-238Vitis vinifera1614966_atBQ796346similar to pumilio domain-containing protein PPD1-1e-9At2g29190APUM2 (Arabidopsis Pumilio 2)C.G.S.X.
0.028e-238Zea maysZm.11695.1.A1_atBM379996hypothetical protein LOC100276820-5e+0At5g20635-C.G.S.X.
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Biological processes



Click GO ID to show a list of genes that are associated with the GO ID.

ECCGO IDProcess Name
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Metabolic pathways



Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View IDLink to Kappa-ViewPathway Name



Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY IDLink to KEGG PATHWAYPathway Name
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