Gene omics information

Query gene ID	PsAffx.C192000031_at
Gene name
Organism	Glycine max

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF	%ile	Gene/Probe ID	Repr.ID	Gene Name	Functional Description	Ev	AGI code	Arabidopsis gene name	S.X.	H.G.	Other DB
0.56	78.2	PsAffx.C192000031_at	PsAffx.C192000031	-	-	2e+0	At4g22420	-	S.X.	H.G.	Please select
0.40	57.1	PsAffx.C59000014_at	PsAffx.C59000014	-	-	1e-1	At5g53910	(S)-2-hydroxy-acid oxidase, peroxisomal, putative / glycolate oxidase, putative / short chain alpha-hydroxy acid oxidase, putative	S.X.	H.G.	Please select
0.35	48.6	PsAffx.psHB028xM12f_s_at	PsAffx.psHB028xM12f	-	-	2e+0	At2g18020	EMB2296 (embryo defective 2296)	S.X.	H.G.	Please select
0.35	48.6	HgAffx.9055.1.S1_at	CB379446	-	-	2e+0	At5g49015	Expressed protein	S.X.	H.G.	Please select
0.34	47.2	PsAffx.CL1693Contig1_at	PsAffx.CL1693Contig1	-	-	6e+0	At5g20190	binding	S.X.	H.G.	Please select
0.33	46.1	PsAffx.C123000031_at	PsAffx.C123000031	-	-	2e+0	At4g22930	PYR4 (PYRIMIDIN 4)	S.X.	H.G.	Please select
0.32	43.7	PsAffx.C9000060_at	PsAffx.C9000060	-	-	1e-3	At5g67080	MAPKKK19	S.X.	H.G.	Please select
0.31	42.2	HgAffx.16208.1.S1_at	CB935526	-	-	5e+0	At5g55750	hydroxyproline-rich glycoprotein family protein	S.X.	H.G.	Please select
0.30	40.4	PsAffx.C1023000002_at	PsAffx.C1023000002	-	-	3e+0	At4g21540	SPHK1 (SPHINGOSINE KINASE 1)	S.X.	H.G.	Please select
0.30	40.4	HgAffx.19601.1.S1_at	CA939579	-	-	4e+0	At5g51845	-	S.X.	H.G.	Please select

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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.

Std2 GX	%ile	GSM ID	Assay Name	GSE ID	Experiment Title
34.8	99.9	GSM292923	95_1465.1L.R283L, Experimental replicate 1	GSE11611	Combined gene expression and QTL analysis of soybean quantitative resistance to Phytophthora sojae
21.6	99.8	GSM293082	81_C019.1N.R9N1U, Experimental replicate 1	GSE11611	Combined gene expression and QTL analysis of soybean quantitative resistance to Phytophthora sojae
16.7	99.7	GSM292838	18_C211.1L.SLL3L, Experimental replicate 1	GSE11611	Combined gene expression and QTL analysis of soybean quantitative resistance to Phytophthora sojae
12.1	99.5	GSM294268	23_2428.2I.R297P, Experimental replicate 2	GSE11611	Combined gene expression and QTL analysis of soybean quantitative resistance to Phytophthora sojae
11.8	99.4	GSM293641	68_2065.2B.R129U, Experimental replicate 2	GSE11611	Combined gene expression and QTL analysis of soybean quantitative resistance to Phytophthora sojae
9.1	99.2	GSM292448	49_C110.1G.V7G1P, Experimental replicate 1	GSE11611	Combined gene expression and QTL analysis of soybean quantitative resistance to Phytophthora sojae
7.3	98.9	GSM244811	18_SLO.I3L2.CEL, Experimental replicate 2	GSE9687	Expression patterns in time and space during P.sojae infection of soybean cultivars differing in quantitative resistance
7.1	98.8	GSM308556	Mature Soybean (Glycine max) pollen grains replicate 1	GSE12286	Genomic Expression Profiling of Mature Soybean (Glycine max) Pollen
7.1	98.8	GSM293773	19_2187.2D.R169L, Experimental replicate 2	GSE11611	Combined gene expression and QTL analysis of soybean quantitative resistance to Phytophthora sojae
6.6	98.7	GSM171703	4_W.E.I.5, Experimental replicate W	GSE7124	Plant and pathogen gene expression during infection by P.sojae of 8 soybean cultivars varying in quantitative resistance

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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF	Ev	BS	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.02	1e-1	38	PsAffx.C2000066_at	PsAffx.C2000066	-	-	2e-1	At3g02320	RNA binding / tRNA (guanine-N2-)-methyltransferase	C.G.	S.X.	Please select
0.01	6e-1	36	PsAffx.C21000059_at	PsAffx.C21000059	-	-	3e-1	At3g52230	unknown protein	C.G.	S.X.	Please select
0.01	6e-1	36	PsAffx.C182000010_at	PsAffx.C182000010	-	-	2e+0	At3g24220	NCED6 (NINE-CIS-EPOXYCAROTENOID DIOXYGENASE 6)	C.G.	S.X.	Please select
0.01	6e-1	36	PsAffx.C171000019_at	PsAffx.C171000019	-	-	3e-1	At5g47050	protein binding / zinc ion binding	C.G.	S.X.	Please select
0.01	6e-1	36	PsAffx.C110000028_at	PsAffx.C110000028	-	-	9e-2	At3g18200	nodulin MtN21 family protein	C.G.	S.X.	Please select
0.02	6e-1	36	HgAffx.15694.1.S1_at	CB299117	-	-	2e-2	At5g11060	KNAT4 (KNOTTED1-LIKE HOMEOBOX GENE 4)	C.G.	S.X.	Please select
0.01	2e+0	34	PsAffx.C75000065_at	PsAffx.C75000065	-	-	5e-1	At2g30766	unknown protein	C.G.	S.X.	Please select
0.02	2e+0	34	PsAffx.C47000045_at	PsAffx.C47000045	-	-	3e+0	At1g05190	emb2394 (embryo defective 2394)	C.G.	S.X.	Please select
0.00	2e+0	34	PsAffx.C149000015_at	PsAffx.C149000015	-	-	8e-2	At5g66230	unknown protein	C.G.	S.X.	Please select

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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF	Ev	BS	Species	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.03	2e+0	34	Arabidopsis thaliana	At4g22420	828337	-	F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PMOF	-	-	-	C.G.	S.X.	Please selectath TAIR (integral)ath,osa KEGG (integral)ath PlantTribes (integral)ath,osa Gramene (integral)ath MPSS (genome)ath InParanoid (ortholog)ath Plant RBP (ortholog)ath SIGnAL (T-DNA)ath RAFL (full-length clone)ath AtGDB (genome)ath Genevestigator (expression)ath,ptr eFP Browser (expression)ath AVT (expression)ath ATTED-II (co-expression)ath AtcisDB (cis-element)ath SUBA (hydropathy)ath AtProteomeath Plant Proteome Databaseath PMN (pathway)ath,osa KaPPA-View 4 (pathway)ath RnR (over-expression)ath iHOP (report)
0.02	3e+0	32	Hordeum vulgare	Contig23878_x_at	Contig23878	-	-	1e+0	At5g63480	unknown protein	C.G.	S.X.	Please select
0.02	8e-1	36	Oryza sativa	OsAffx.22244.1.S1_at	-	-	-	0			C.G.	S.X.	Please selectath,osa KEGG (integral)ath,osa Gramene (integral)ath,osa KaPPA-View 4 (pathway)
0.03	2e+0	34	Populus trichocarpa	PtpAffx.223163.1.S1_at	pmrna41029	hypothetical protein	-	9e+0	At5g65410	HB25 (HOMEOBOX PROTEIN 25)	C.G.	S.X.	Please selectath,ptr eFP Browser (expression)
0.04	2e-3	44	Triticum aestivum	TaAffx.30098.1.S1_at	CA628792	-	-	2e+1	At5g23540	26S proteasome regulatory subunit, putative	C.G.	S.X.	Please select
0.02	2e+0	32	Vitis vinifera	1622379_at	CF604690	hypothetical protein LOC100256634	-	1e+0	At4g37685	unknown protein	C.G.	S.X.	Please select
0.02	7e-1	34	Zea mays	Zm.16240.1.A1_s_at	BM267199	hypothetical protein LOC100280007	-	5e+0	At2g20585	NFD6 (NUCLEAR FUSION DEFECTIVE 6)	C.G.	S.X.	Please select

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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC	GO ID	Process Name

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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID	Link to Kappa-View	Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID	Link to KEGG PATHWAY	Pathway Name

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