Gene omics information

Query gene ID	PsAffx.C191000021_at
Gene name
Organism	Glycine max

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF	%ile	Gene/Probe ID	Repr.ID	Gene Name	Functional Description	Ev	AGI code	Arabidopsis gene name	S.X.	H.G.	Other DB
0.40	57.1	PsAffx.C191000021_at	PsAffx.C191000021	-	-	3e+0	At5g16570	GLN1	S.X.	H.G.	Please select
0.36	50.8	PsAffx.psZS012xE16f_at	PsAffx.psZS012xE16f	-	-	3e-4	At2g42610	LSH10 (LIGHT SENSITIVE HYPOCOTYLS 10)	S.X.	H.G.	Please select
0.32	43.7	HgAffx.11207.1.S1_at	CB935243	-	-	5e+0	At4g17215	unknown protein	S.X.	H.G.	Please select
0.13	16.3	PsAffx.C34000071_at	PsAffx.C34000071	-	-	3e+0	At5g19050	unknown protein	S.X.	H.G.	Please select
0.04	7.0	PsAffx.C57000071_at	PsAffx.C57000071	-	-	1e+0	At1g35340	ATP-dependent protease La (LON) domain-containing protein	S.X.	H.G.	Please select
0.01	3.4	HgAffx.17744.1.S1_at	CB279025	-	-	5e-1	At1g79040	PSBR (photosystem II subunit R)	S.X.	H.G.	Please select

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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.

Std2 GX	%ile	GSM ID	Assay Name	GSE ID	Experiment Title
944.2	100.0	GSM182032	Laser capture microdissected (LCM) suspensor at the heart stage, biological replicate 1	GSE7511	Expression data from soybean seed compartments with embryos at the heart stage
150.0	100.0	GSM171717	7_Z.K.I.5, Experimental replicate Z	GSE7124	Plant and pathogen gene expression during infection by P.sojae of 8 soybean cultivars varying in quantitative resistance
104.0	100.0	GSM292168	23_1022.1A.R012P, Experimental replicate 1	GSE11611	Combined gene expression and QTL analysis of soybean quantitative resistance to Phytophthora sojae
87.8	100.0	GSM293201	82_1109.1O.R069L, Experimental replicate 1	GSE11611	Combined gene expression and QTL analysis of soybean quantitative resistance to Phytophthora sojae
76.9	100.0	GSM292412	16_1250.1G.R155P, Experimental replicate 1	GSE11611	Combined gene expression and QTL analysis of soybean quantitative resistance to Phytophthora sojae
71.2	100.0	GSM294268	23_2428.2I.R297P, Experimental replicate 2	GSE11611	Combined gene expression and QTL analysis of soybean quantitative resistance to Phytophthora sojae
59.9	99.9	GSM147938	Laser capture microdissected (LCM) suspensor at the globular stage, biological replicate 3	GSE6414	Expression data from soybean seed compartments with embryos at the globular stage
57.9	99.9	GSM293613	42_2054.2B.R307P, Experimental replicate 2	GSE11611	Combined gene expression and QTL analysis of soybean quantitative resistance to Phytophthora sojae
45.0	99.9	GSM292462	61_1271.1G.R173L, Experimental replicate 1	GSE11611	Combined gene expression and QTL analysis of soybean quantitative resistance to Phytophthora sojae
43.9	99.9	GSM292367	39_C108.1F.V7F3P, Experimental replicate 1	GSE11611	Combined gene expression and QTL analysis of soybean quantitative resistance to Phytophthora sojae

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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF	Ev	BS	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.04	1e-3	46	PsAffx.C191000017_at	PsAffx.C191000017	-	-	2e+0	At5g62400	unknown protein	C.G.	S.X.	Please select
0.02	4e-3	44	PsAffx.C203000019_at	PsAffx.C203000019	-	-	3e+0	At3g55900	F-box family protein	C.G.	S.X.	Please select
0.01	3e-1	38	PsAffx.C91000050_at	PsAffx.C91000050	-	-	7e-1	At2g05510	glycine-rich protein	C.G.	S.X.	Please select
0.01	3e-1	38	PsAffx.C503000002_at	PsAffx.C503000002	-	-	1e-1	At4g00810	60S acidic ribosomal protein P1 (RPP1B)	C.G.	S.X.	Please select
0.06	3e-1	38	PsAffx.C129000006_at	PsAffx.C129000006	-	-	2e+0	At2g15170	-	C.G.	S.X.	Please select
0.01	1e+0	36	PsAffx.C71000056_s_at	PsAffx.C71000056	-	-	2e+0	At5g01710	-	C.G.	S.X.	Please select
0.05	1e+0	36	PsAffx.C340000004_at	PsAffx.C340000004	-	-	2e+0	At1g11250	SYP125 (SYNTAXIN OF PLANTS 125)	C.G.	S.X.	Please select
0.02	1e+0	36	PsAffx.C129000005_at	PsAffx.C129000005	-	-	7e+0	At4g34620	SSR16 (SMALL SUBUNIT RIBOSOMAL PROTEIN 16)	C.G.	S.X.	Please select
0.02	1e+0	36	PsAffx.C119000036_at	PsAffx.C119000036	-	-	9e-1	At5g58590	RANBP1 (RAN BINDING PROTEIN 1)	C.G.	S.X.	Please select

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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF	Ev	BS	Species	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.01	3e+0	34	Arabidopsis thaliana	At5g16570	831519	GLN1	Encodes a cytosolic glutamine synthetase, the enzyme has high affinity with substrate ammonium	-	-	-	C.G.	S.X.	Please selectath TAIR (integral)ath,osa KEGG (integral)ath PlantTribes (integral)ath,osa Gramene (integral)ath MPSS (genome)ath InParanoid (ortholog)ath Plant RBP (ortholog)ath SIGnAL (T-DNA)ath RAFL (full-length clone)ath AtGDB (genome)ath Genevestigator (expression)ath,ptr eFP Browser (expression)ath AVT (expression)ath ATTED-II (co-expression)ath AtcisDB (cis-element)ath SUBA (hydropathy)ath AtProteomeath Plant Proteome Databaseath PMN (pathway)ath,osa KaPPA-View 4 (pathway)ath RnR (over-expression)ath iHOP (report)
0.02	4e-1	36	Hordeum vulgare	HW01N09u_at	HW01N09u	-	-	4e+0	At5g05690	CPD (CONSTITUTIVE PHOTOMORPHOGENIC DWARF)	C.G.	S.X.	Please select
0.02	6e+0	34	Oryza sativa	OsAffx.27928.1.A1_at	-	-	-	0			C.G.	S.X.	Please selectath,osa KEGG (integral)ath,osa Gramene (integral)ath,osa KaPPA-View 4 (pathway)
0.02	3e-1	38	Populus trichocarpa	Ptp.4740.1.S1_at	CX655610	hypothetical protein	-	8e-24	At1g19600	pfkB-type carbohydrate kinase family protein	C.G.	S.X.	Please selectath,ptr eFP Browser (expression)
0.02	8e-1	36	Triticum aestivum	TaAffx.5117.1.S1_at	CA721495	-	-	4e+0	At4g02075	PIT1 (pitchoun 1)	C.G.	S.X.	Please select
0.01	4e+0	32	Vitis vinifera	1609851_at	CF512845	hypothetical protein LOC100262748	-	9e-54	At5g67270	ATEB1C (microtubule end binding protein 1)	C.G.	S.X.	Please select
0.02	3e-1	36	Zea mays	Zm.13409.1.A1_at	AF457934.1	-	-	6e-2	At1g62640	KAS III (3-KETOACYL-ACYL CARRIER PROTEIN SYNTHASE III)	C.G.	S.X.	Please select

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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC	GO ID	Process Name

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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID	Link to Kappa-View	Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID	Link to KEGG PATHWAY	Pathway Name

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