CoP: Co-expressed Biological Processes

Gene omics information

Query gene ID PsAffx.C177000015_at

Gene name

Organism Glycine max

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF %ile Gene/Probe ID Repr.ID Gene Name Functional Description Ev AGI code Arabidopsis gene name S.X. H.G. Other DB
0.91 98.6 PsAffx.C177000015_at PsAffx.C177000015 - - 2e-1 At4g25150 acid phosphatase, putative S.X. H.G.
0.83 92.5 HgAffx.24315.1.S1_at CB374815 - - 9e-1 At4g15930 microtubule motor S.X. H.G.
0.83 92.5 PsAffx.C47000085_at PsAffx.C47000085 - - 2e+0 At1g04350 2-oxoglutarate-dependent dioxygenase, putative S.X. H.G.
0.80 91.5 PsAffx.C154000024_at PsAffx.C154000024 - - 2e-1 At5g62160 AtZIP12 (ZINC TRANSPORTER 12 PRECURSOR) S.X. H.G.
0.77 90.3 HgAffx.11003.1.S1_at CB824101 - - 4e+0 At3g28630 - S.X. H.G.
0.77 90.3 HgAffx.5776.1.S1_at CB826435 - - 1e+0 At5g59030 COPT1 (copper transporter 1) S.X. H.G.
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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX %ile GSM ID Assay Name GSE ID Experiment Title
1750.5 100.0 GSM292923 95_1465.1L.R283L, Experimental replicate 1 GSE11611 Combined gene expression and QTL analysis of soybean quantitative resistance to Phytophthora sojae
125.8 100.0 GSM292892 67_1464.1L.R282P, Experimental replicate 1 GSE11611 Combined gene expression and QTL analysis of soybean quantitative resistance to Phytophthora sojae
35.2 99.9 GSM293110 25_C040.1O.SLO1P, Experimental replicate 1 GSE11611 Combined gene expression and QTL analysis of soybean quantitative resistance to Phytophthora sojae
32.3 99.9 GSM294474 40_2520.2K.R050P, Experimental replicate 2 GSE11611 Combined gene expression and QTL analysis of soybean quantitative resistance to Phytophthora sojae
28.5 99.8 GSM294372 32_2453.2J.R254L, Experimental replicate 2 GSE11611 Combined gene expression and QTL analysis of soybean quantitative resistance to Phytophthora sojae
24.6 99.8 GSM293024 29_1060.1N.R035P, Experimental replicate 1 GSE11611 Combined gene expression and QTL analysis of soybean quantitative resistance to Phytophthora sojae
17.3 99.7 GSM294473 3_3182.2K.V7K1P, Experimental replicate 2 GSE11611 Combined gene expression and QTL analysis of soybean quantitative resistance to Phytophthora sojae
10.5 99.3 GSM238053 Soybean-PS46R-2-RMA GSE9374 Exploration of microarrays as tools to assess substantial equivalence of genetically modified soybeans
9.9 99.3 GSM209579 susceptible_24hours_rep1 failed QC GSE8432 Expression survey of Rpp1 soybean line PI200492 resistant to P. pachyrhizi
9.8 99.3 GSM238055 Soybean-PS46R-4-RMA GSE9374 Exploration of microarrays as tools to assess substantial equivalence of genetically modified soybeans
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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF Ev BS Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.22 1e-36 155 PsAffx.C177000011_at PsAffx.C177000011 - - 2e+0 At3g03880 unknown protein C.G. S.X.
0.02 6e-2 40 PsAffx.CL1392Contig1_at PsAffx.CL1392Contig1 - - 2e+0 At1g14950 major latex protein-related / MLP-related C.G. S.X.
0.01 2e-1 38 PsAffx.C96000021_at PsAffx.C96000021 - - 2e-2 At4g06634 zinc finger (C2H2 type) family protein C.G. S.X.
0.01 2e-1 38 PsAffx.C182000022_at PsAffx.C182000022 - - 1e+1 At5g14600 tRNA (adenine-N1-)-methyltransferase C.G. S.X.
0.01 2e-1 38 PsAffx.C103000020_at PsAffx.C103000020 - - 4e-2 At2g25565 - C.G. S.X.
0.01 2e-1 38 PsAffx.C1000046_at PsAffx.C1000046 - - 5e-1 At5g13750 ZIFL1 (ZINC INDUCED FACILITATOR-like 1) C.G. S.X.
0.02 2e-1 38 HgAffx.15025.1.S1_at CB376179 - - 4e+0 At4g16090 unknown protein C.G. S.X.
0.01 1e+0 36 PsAffx.C96000023_at PsAffx.C96000023 - - 1e+0 At4g32710 ATP binding / kinase/ protein kinase/ protein serine/threonine kinase/ protein tyrosine kinase C.G. S.X.
0.01 1e+0 36 PsAffx.C69000024_at PsAffx.C69000024 - - 1e+1 At5g19530 ACL5 (ACAULIS 5) C.G. S.X.
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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF Ev BS Species Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.02 2e-1 38 Arabidopsis thaliana At4g25150 828618 acid phosphatase, putative F:acid phosphatase activity;P:biological_process unknown;C:endomembrane system;BPOM - - - C.G. S.X.
0.03 9e-2 38 Hordeum vulgare Contig18153_at Contig18153 - - 4e+0 At5g63440 unknown protein C.G. S.X.
0.02 3e-1 38 Oryza sativa Os05g0182001 9633.m00795 - - 3e-3 At1g71730 unknown protein C.G. S.X.
0.02 4e+0 34 Populus trichocarpa PtpAffx.22704.2.S1_at CV272454 hypothetical protein - 9e-45 At5g28050 cytidine/deoxycytidylate deaminase family protein C.G. S.X.
0.02 7e-1 36 Triticum aestivum TaAffx.16336.2.S1_at BE498044 - - 1e+0 At3g29140 unknown protein C.G. S.X.
0.02 2e-1 36 Vitis vinifera 1610190_at CF206158.1 - - 2e-12 At2g47400 CP12-1 C.G. S.X.
0.02 2e-2 40 Zea mays Zm.9477.1.A1_at BM269210 - - 7e-18 At1g03140 splicing factor Prp18 family protein C.G. S.X.
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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC GO ID Process Name
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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID Link to Kappa-View Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID Link to KEGG PATHWAY Pathway Name
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