Gene omics information

Query gene ID	PsAffx.C154000024_at
Gene name
Organism	Glycine max

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF	%ile	Gene/Probe ID	Repr.ID	Gene Name	Functional Description	Ev	AGI code	Arabidopsis gene name	S.X.	H.G.	Other DB
0.91	98.6	PsAffx.C154000024_at	PsAffx.C154000024	-	-	2e-1	At5g62160	AtZIP12 (ZINC TRANSPORTER 12 PRECURSOR)	S.X.	H.G.	Please select
0.91	98.6	PsAffx.C86000057_at	PsAffx.C86000057	-	-	2e+0	At1g06690	aldo/keto reductase family protein	S.X.	H.G.	Please select
0.91	98.6	HgAffx.24315.1.S1_at	CB374815	-	-	9e-1	At4g15930	microtubule motor	S.X.	H.G.	Please select
0.91	98.6	PsAffx.C47000085_at	PsAffx.C47000085	-	-	2e+0	At1g04350	2-oxoglutarate-dependent dioxygenase, putative	S.X.	H.G.	Please select
0.80	91.5	PsAffx.C177000015_at	PsAffx.C177000015	-	-	2e-1	At4g25150	acid phosphatase, putative	S.X.	H.G.	Please select
0.61	81.8	HgAffx.5776.1.S1_at	CB826435	-	-	1e+0	At5g59030	COPT1 (copper transporter 1)	S.X.	H.G.	Please select

Click here to hide the above table.

Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.

Std2 GX	%ile	GSM ID	Assay Name	GSE ID	Experiment Title
1967.6	100.0	GSM292923	95_1465.1L.R283L, Experimental replicate 1	GSE11611	Combined gene expression and QTL analysis of soybean quantitative resistance to Phytophthora sojae
45.5	99.9	GSM293109	24_1143.1O.R091U, Experimental replicate 1	GSE11611	Combined gene expression and QTL analysis of soybean quantitative resistance to Phytophthora sojae
43.9	99.9	GSM182032	Laser capture microdissected (LCM) suspensor at the heart stage, biological replicate 1	GSE7511	Expression data from soybean seed compartments with embryos at the heart stage
31.1	99.9	GSM191089	Soybean_Cotyledon_OI1	GSE7881	Expression data from soybean seed compartments with embryos at the cotyledon stage
28.8	99.8	GSM292410	14_1254.1G.R161P, Experimental replicate 1	GSE11611	Combined gene expression and QTL analysis of soybean quantitative resistance to Phytophthora sojae
26.3	99.8	GSM292916	89_C203.1L.SLL1U, Experimental replicate 1	GSE11611	Combined gene expression and QTL analysis of soybean quantitative resistance to Phytophthora sojae
25.6	99.8	GSM293653	79_2062.2B.R280P, Experimental replicate 2	GSE11611	Combined gene expression and QTL analysis of soybean quantitative resistance to Phytophthora sojae
18.5	99.7	GSM238043	Soybean-Bayfield-5-RMA	GSE9374	Exploration of microarrays as tools to assess substantial equivalence of genetically modified soybeans
18.4	99.7	GSM292515	30_1290.1H.R183P, Experimental replicate 1	GSE11611	Combined gene expression and QTL analysis of soybean quantitative resistance to Phytophthora sojae
15.6	99.6	GSM294268	23_2428.2I.R297P, Experimental replicate 2	GSE11611	Combined gene expression and QTL analysis of soybean quantitative resistance to Phytophthora sojae

Click here to hide the above table.

Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF	Ev	BS	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.04	3e-1	36	PsAffx.CL728Contig1_s_at	PsAffx.CL728Contig1	-	-	1e+0	At1g23205	invertase/pectin methylesterase inhibitor family protein	C.G.	S.X.	Please select
0.04	3e-1	36	PsAffx.CL728Contig1_at	PsAffx.CL728Contig1	-	-	1e+0	At1g23205	invertase/pectin methylesterase inhibitor family protein	C.G.	S.X.	Please select
0.03	3e-1	36	PsAffx.CL1682Contig1_s_at	PsAffx.CL1682Contig1	-	-	1e-1	At1g76060	EMB1793 (EMBRYO DEFECTIVE 1793)	C.G.	S.X.	Please select
0.03	3e-1	36	PsAffx.C2000221_at	PsAffx.C2000221	-	-	2e+0	At4g22420	-	C.G.	S.X.	Please select
0.02	3e-1	36	Gma.3552.1.S1_at	CD397499	-	-	1e-32	At5g45550	mob1/phocein family protein	C.G.	S.X.	Please select
0.04	1e+0	34	PsAffx.CL1585Contig1_at	PsAffx.CL1585Contig1	-	-	3e+0	At5g16050	GRF5 (GENERAL REGULATORY FACTOR 5)	C.G.	S.X.	Please select
0.01	1e+0	34	PsAffx.C8000009_at	PsAffx.C8000009	-	-	5e-1	At2g37710	RLK (receptor lectin kinase)	C.G.	S.X.	Please select
0.02	1e+0	34	PsAffx.C51000058_at	PsAffx.C51000058	-	-	2e+0	At2g18230	AtPPa2 (Arabidopsis thaliana pyrophosphorylase 2)	C.G.	S.X.	Please select
0.01	1e+0	34	PsAffx.C50000094_s_at	PsAffx.C50000094	-	-	3e-1	At4g39200	40S ribosomal protein S25 (RPS25E)	C.G.	S.X.	Please select

Click here to hide the above table.

Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF	Ev	BS	Species	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.02	2e-1	36	Arabidopsis thaliana	At5g62160	836336	AtZIP12 (ZINC TRANSPORTER 12 PRECURSOR)	member of Fe(II) transporter isolog family	-	-	-	C.G.	S.X.	Please selectath TAIR (integral)ath,osa KEGG (integral)ath PlantTribes (integral)ath,osa Gramene (integral)ath MPSS (genome)ath InParanoid (ortholog)ath Plant RBP (ortholog)ath SIGnAL (T-DNA)ath RAFL (full-length clone)ath AtGDB (genome)ath Genevestigator (expression)ath,ptr eFP Browser (expression)ath AVT (expression)ath ATTED-II (co-expression)ath AtcisDB (cis-element)ath SUBA (hydropathy)ath AtProteomeath Plant Proteome Databaseath PMN (pathway)ath,osa KaPPA-View 4 (pathway)ath RnR (over-expression)ath iHOP (report)
0.03	7e+0	30	Hordeum vulgare	Contig12786_at	Contig12786	-	-	3e+0	At4g18280	glycine-rich cell wall protein-related	C.G.	S.X.	Please select
0.03	2e+0	34	Oryza sativa	Os10g0187000	9638.m00955	-	-	1e+0	At1g49850	zinc finger (C3HC4-type RING finger) family protein	C.G.	S.X.	Please selectath,osa KEGG (integral)ath,osa Gramene (integral)ath,osa KaPPA-View 4 (pathway)
0.03	5e+0	32	Populus trichocarpa	PtpAffx.217770.1.S1_at	pmrna33165	hypothetical protein	-	4e+0	At5g53470	ACBP1 (ACYL-COA BINDING PROTEIN 1)	C.G.	S.X.	Please selectath,ptr eFP Browser (expression)
0.04	3e-1	36	Triticum aestivum	TaAffx.111761.1.S1_at	CA634258	-	-	4e+0	At3g48700	ATCXE13 (ARABIDOPSIS THALIANA CARBOXYESTERASE 13)	C.G.	S.X.	Please select
0.04	4e+0	30	Vitis vinifera	1608715_at	CB977234	hypothetical protein LOC100258268	-	4e+0	At5g10280	ATMYB92 (MYB DOMAIN PROTEIN 92)	C.G.	S.X.	Please select
0.03	2e+0	32	Zea mays	Zm.18100.3.A1_at	BI097725	ultraviolet-B-repressible protein	-	9e-2	At4g27810	unknown protein	C.G.	S.X.	Please select

Click here to hide the above table.

Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC	GO ID	Process Name

Click here to hide the above table.

Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID	Link to Kappa-View	Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID	Link to KEGG PATHWAY	Pathway Name

Click here to hide the above table.

Back to the CoP portal site

Back to the KAGIANA project homepage