Gene omics information

Query gene ID	PsAffx.C137000034_s_at
Gene name
Organism	Glycine max

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF	%ile	Gene/Probe ID	Repr.ID	Gene Name	Functional Description	Ev	AGI code	Arabidopsis gene name	S.X.	H.G.	Other DB
0.91	98.6	PsAffx.C137000034_s_at	PsAffx.C137000034	-	-	2e-1	At3g44110	ATJ3	S.X.	H.G.	Please select
0.94	99.2	GmaAffx.55284.1.S1_at	BM108343	-	-	3e+0	At5g10390	histone H3	S.X.	H.G.	Please select
0.94	99.2	PsAffx.C68000072_at	PsAffx.C68000072	-	-	4e+0	At2g41410	calmodulin, putative	S.X.	H.G.	Please select
0.91	98.6	HgAffx.3013.1.S1_at	CK349173	-	-	3e-1	At1g66890	-	S.X.	H.G.	Please select
0.91	98.6	HgAffx.5776.1.S1_at	CB826435	-	-	1e+0	At5g59030	COPT1 (copper transporter 1)	S.X.	H.G.	Please select
0.91	98.6	HgAffx.11003.1.S1_at	CB824101	-	-	4e+0	At3g28630	-	S.X.	H.G.	Please select
0.88	93.4	PsAffx.C63000067_at	PsAffx.C63000067	-	-	1e-1	At5g05150	AtATG18e	S.X.	H.G.	Please select
0.88	93.4	PsAffx.C115000050_s_at	PsAffx.C115000050	-	-	2e+0	At5g66490	unknown protein	S.X.	H.G.	Please select
0.88	93.4	PsAffx.C6000193_at	PsAffx.C6000193	-	-	1e+1	Atmg00450	-	S.X.	H.G.	Please select
0.86	93.0	PsAffx.C177000015_at	PsAffx.C177000015	-	-	2e-1	At4g25150	acid phosphatase, putative	S.X.	H.G.	Please select

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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.

Std2 GX	%ile	GSM ID	Assay Name	GSE ID	Experiment Title
1193.2	100.0	GSM292923	95_1465.1L.R283L, Experimental replicate 1	GSE11611	Combined gene expression and QTL analysis of soybean quantitative resistance to Phytophthora sojae
94.2	100.0	GSM292496	13_1310.1H.R194P, Experimental replicate 1	GSE11611	Combined gene expression and QTL analysis of soybean quantitative resistance to Phytophthora sojae
58.9	99.9	GSM293641	68_2065.2B.R129U, Experimental replicate 2	GSE11611	Combined gene expression and QTL analysis of soybean quantitative resistance to Phytophthora sojae
57.5	99.9	GSM292921	93_1448.1L.R273P, Experimental replicate 1	GSE11611	Combined gene expression and QTL analysis of soybean quantitative resistance to Phytophthora sojae
39.6	99.9	GSM201109	Laser capture microdissected (LCM) cotyledon abaxial epidermis at the early maturation stage, biological replicate 2	GSE8112	Expression data from soybean seed compartments with embryos at the early maturation stage
34.4	99.9	GSM293353	40_1564.1Q.R151P, Experimental replicate 1	GSE11611	Combined gene expression and QTL analysis of soybean quantitative resistance to Phytophthora sojae
25.0	99.8	GSM293092	90_C036.1N.SLN3P, Experimental replicate 1	GSE11611	Combined gene expression and QTL analysis of soybean quantitative resistance to Phytophthora sojae
22.5	99.8	GSM209589	resistant_48hours_rep2	GSE8432	Expression survey of Rpp1 soybean line PI200492 resistant to P. pachyrhizi
20.5	99.7	GSM201101	Laser capture microdissected (LCM) axis parenchyma at the early maturation stage, biological replicate 2	GSE8112	Expression data from soybean seed compartments with embryos at the early maturation stage
19.9	99.7	GSM244814	19_SLO.M5W2.CEL, Experimental replicate 2	GSE9687	Expression patterns in time and space during P.sojae infection of soybean cultivars differing in quantitative resistance

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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF	Ev	BS	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.31	2e-153	543	PsAffx.C204000008_at	PsAffx.C204000008	-	-	4e-1	At3g44110	ATJ3	C.G.	S.X.	Please select
0.22	4e-133	476	PsAffx.psHB039xL09f_s_at	PsAffx.psHB039xL09f	-	-	1e+1	At5g47630	mtACP3 (mitochondrial acyl carrier protein 3)	C.G.	S.X.	Please select
0.03	2e-20	101	PsAffx.C27000069_at	PsAffx.C27000069	-	-	6e-1	At5g60230	SEN2 (splicing endonuclease 2)	C.G.	S.X.	Please select
0.03	2e-20	101	PsAffx.C20000044_at	PsAffx.C20000044	-	-	1e+0	At3g12880	invertase/pectin methylesterase inhibitor family protein	C.G.	S.X.	Please select
0.02	2e-20	101	PsAffx.C144000017_at	PsAffx.C144000017	-	-	6e+0	At4g27000	ATRBP45C	C.G.	S.X.	Please select
0.04	2e-20	101	PsAffx.C12000014_at	PsAffx.C12000014	-	-	3e-2	At1g01050	AtPPa1 (Arabidopsis thaliana pyrophosphorylase 1)	C.G.	S.X.	Please select
0.02	2e-2	42	PsAffx.psHB041xJ12f_at	PsAffx.psHB041xJ12f	-	-	2e+1	At5g02020	unknown protein	C.G.	S.X.	Please select
0.01	2e-2	42	PsAffx.C24000064_at	PsAffx.C24000064	-	-	2e-1	At2g32290	BAM6 (BETA-AMYLASE 6)	C.G.	S.X.	Please select
0.01	2e-2	42	PsAffx.C224000004_at	PsAffx.C224000004	-	-	1e+0	At3g10912	CPuORF63 (Conserved peptide upstream open reading frame 63)	C.G.	S.X.	Please select

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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF	Ev	BS	Species	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.01	2e-1	38	Arabidopsis thaliana	At3g44110	823531	ATJ3	homologous to the co-chaperon DNAJ protein from E coli	-	-	-	C.G.	S.X.	Please selectath TAIR (integral)ath,osa KEGG (integral)ath PlantTribes (integral)ath,osa Gramene (integral)ath MPSS (genome)ath InParanoid (ortholog)ath Plant RBP (ortholog)ath SIGnAL (T-DNA)ath RAFL (full-length clone)ath AtGDB (genome)ath Genevestigator (expression)ath,ptr eFP Browser (expression)ath AVT (expression)ath ATTED-II (co-expression)ath AtcisDB (cis-element)ath SUBA (hydropathy)ath AtProteomeath Plant Proteome Databaseath PMN (pathway)ath,osa KaPPA-View 4 (pathway)ath RnR (over-expression)ath iHOP (report)
0.02	4e-1	36	Hordeum vulgare	HU11D23u_at	HU11D23u	-	-	1e+0	At5g62210	embryo-specific protein-related	C.G.	S.X.	Please select
0.01	2e+0	36	Oryza sativa	Os01g0942100	NM_189724.1	-	-	7e+0	At2g18160	ATBZIP2 (ARABIDOPSIS THALIANA BASIC LEUCINE-ZIPPER 2)	C.G.	S.X.	Please selectath,osa KEGG (integral)ath,osa Gramene (integral)ath,osa KaPPA-View 4 (pathway)
0.01	5e+0	34	Populus trichocarpa	PtpAffx.210772.1.S1_at	pmrna21135	hypothetical protein	-	3e-1	At4g22890	PGR5-LIKE A	C.G.	S.X.	Please selectath,ptr eFP Browser (expression)
0.02	4e+0	34	Triticum aestivum	TaAffx.51315.1.A1_at	CA727601	-	-	6e+0	At5g15820	zinc finger (C3HC4-type RING finger) family protein	C.G.	S.X.	Please select
0.02	1e+0	34	Vitis vinifera	1609393_at	CF404605	hypothetical protein LOC100251055	-	2e-1	At2g37300	unknown protein	C.G.	S.X.	Please select
0.01	4e-1	36	Zea mays	Zm.3972.2.A1_at	CF623465	-	-	5e-66	At5g43010	RPT4A	C.G.	S.X.	Please select

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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC	GO ID	Process Name

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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID	Link to Kappa-View	Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID	Link to KEGG PATHWAY	Pathway Name

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