Gene omics information

Query gene ID	PsAffx.C137000006_at
Gene name
Organism	Glycine max

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF	%ile	Gene/Probe ID	Repr.ID	Gene Name	Functional Description	Ev	AGI code	Arabidopsis gene name	S.X.	H.G.	Other DB
0.91	98.6	PsAffx.C137000006_at	PsAffx.C137000006	-	-	5e+0	At4g35690	unknown protein	S.X.	H.G.	Please select
0.60	80.7	PsAffx.C145000027_at	PsAffx.C145000027	-	-	1e+0	At3g28220	meprin and TRAF homology domain-containing protein / MATH domain-containing protein	S.X.	H.G.	Please select
0.55	76.3	PsAffx.C151000036_at	PsAffx.C151000036	-	-	2e+0	At4g36530	hydrolase, alpha/beta fold family protein	S.X.	H.G.	Please select
0.44	63.3	PsAffx.psZG005xN22f_s_at	PsAffx.psZG005xN22f	-	-	9e+0	At5g14602	unknown protein	S.X.	H.G.	Please select
0.20	25.1	PsAffx.C83000002_at	PsAffx.C83000002	-	-	9e-1	At3g28980	unknown protein	S.X.	H.G.	Please select
0.10	13.0	PsAffx.C86000041_at	PsAffx.C86000041	-	-	2e-1	At1g31330	PSAF (photosystem I subunit F)	S.X.	H.G.	Please select

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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.

Std2 GX	%ile	GSM ID	Assay Name	GSE ID	Experiment Title
194.6	100.0	GSM293113	28_C047.1O.R9O2L, Experimental replicate 1	GSE11611	Combined gene expression and QTL analysis of soybean quantitative resistance to Phytophthora sojae
189.7	100.0	GSM292229	25_C029.1B.R9B2L, Experimental replicate 1	GSE11611	Combined gene expression and QTL analysis of soybean quantitative resistance to Phytophthora sojae
160.5	100.0	GSM244813	18_VP9.I5U4.CEL, Experimental replicate 4	GSE9687	Expression patterns in time and space during P.sojae infection of soybean cultivars differing in quantitative resistance
103.5	100.0	GSM292222	16_C029.1B.R9B2U, Experimental replicate 1	GSE11611	Combined gene expression and QTL analysis of soybean quantitative resistance to Phytophthora sojae
83.8	100.0	GSM171703	4_W.E.I.5, Experimental replicate W	GSE7124	Plant and pathogen gene expression during infection by P.sojae of 8 soybean cultivars varying in quantitative resistance
67.2	100.0	GSM182032	Laser capture microdissected (LCM) suspensor at the heart stage, biological replicate 1	GSE7511	Expression data from soybean seed compartments with embryos at the heart stage
64.6	99.9	GSM292923	95_1465.1L.R283L, Experimental replicate 1	GSE11611	Combined gene expression and QTL analysis of soybean quantitative resistance to Phytophthora sojae
61.1	99.9	GSM294268	23_2428.2I.R297P, Experimental replicate 2	GSE11611	Combined gene expression and QTL analysis of soybean quantitative resistance to Phytophthora sojae
42.4	99.9	GSM292873	4_1486.1L.R293P, Experimental replicate 1	GSE11611	Combined gene expression and QTL analysis of soybean quantitative resistance to Phytophthora sojae
33.4	99.9	GSM171633	18_Y.F.M.3, Experimental replicate Y	GSE7124	Plant and pathogen gene expression during infection by P.sojae of 8 soybean cultivars varying in quantitative resistance

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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF	Ev	BS	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.29	2e-126	454	PsAffx.psMA004xE03f_at	PsAffx.psMA004xE03f	-	-	5e+0	At2g39705	RTFL8 (ROTUNDIFOLIA LIKE 8)	C.G.	S.X.	Please select
0.01	3e-2	42	PsAffx.C173000007_at	PsAffx.C173000007	-	-	3e-1	At1g02780	emb2386 (embryo defective 2386)	C.G.	S.X.	Please select
0.01	1e-1	40	PsAffx.C111000021_at	PsAffx.C111000021	-	-	2e+0	At2g40390	unknown protein	C.G.	S.X.	Please select
0.01	4e-1	38	PsAffx.C73000057_at	PsAffx.C73000057	-	-	7e-1	At1g61930	unknown protein	C.G.	S.X.	Please select
0.01	2e+0	36	PsAffx.CL5Contig4_at	PsAffx.CL5Contig4	-	-	1e-8	At3g27060	TSO2 (TSO meaning 'ugly' in Chinese)	C.G.	S.X.	Please select
0.01	2e+0	36	PsAffx.C76000056_s_at	PsAffx.C76000056	-	-	6e-2	At4g33690	unknown protein	C.G.	S.X.	Please select
0.01	2e+0	36	PsAffx.C55000004_s_at	PsAffx.C55000004	-	-	9e-2	At2g47470	UNE5 (UNFERTILIZED EMBRYO SAC 5)	C.G.	S.X.	Please select
0.01	2e+0	36	PsAffx.C49000039_at	PsAffx.C49000039	-	-	1e+0	At5g24105	AGP41 (ARABINOGALACTAN-PROTEIN 41)	C.G.	S.X.	Please select
0.01	2e+0	36	PsAffx.C3000013_at	PsAffx.C3000013	-	-	4e+0	At5g44070	CAD1 (CADMIUM SENSITIVE 1)	C.G.	S.X.	Please select

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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF	Ev	BS	Species	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.01	5e+0	34	Arabidopsis thaliana	At4g35690	829721	unknown protein	F:molecular_function unknown;P:biological_process unknown;C:unknown;PFB	-	-	-	C.G.	S.X.	Please selectath TAIR (integral)ath,osa KEGG (integral)ath PlantTribes (integral)ath,osa Gramene (integral)ath MPSS (genome)ath InParanoid (ortholog)ath Plant RBP (ortholog)ath SIGnAL (T-DNA)ath RAFL (full-length clone)ath AtGDB (genome)ath Genevestigator (expression)ath,ptr eFP Browser (expression)ath AVT (expression)ath ATTED-II (co-expression)ath AtcisDB (cis-element)ath SUBA (hydropathy)ath AtProteomeath Plant Proteome Databaseath PMN (pathway)ath,osa KaPPA-View 4 (pathway)ath RnR (over-expression)ath iHOP (report)
0.03	9e-3	42	Hordeum vulgare	Contig25665_at	Contig25665	-	-	6e+0	At4g36760	ATAPP1	C.G.	S.X.	Please select
0.03	6e-1	38	Oryza sativa	Os11g0539800	AK105673.1	-	The start codon is not identified.	2e-18	At4g36760	ATAPP1	C.G.	S.X.	Please selectath,osa KEGG (integral)ath,osa Gramene (integral)ath,osa KaPPA-View 4 (pathway)
0.01	4e-1	38	Populus trichocarpa	PtpAffx.220515.1.S1_at	pmrna36912	sulfate/bicarbonate/oxalate exchanger and transporter sat-1	-	7e-1	At5g59490	haloacid dehalogenase-like hydrolase family protein	C.G.	S.X.	Please selectath,ptr eFP Browser (expression)
0.01	5e+0	34	Triticum aestivum	TaAffx.82067.1.S1_at	CA678040	-	-	1e+0	At5g12300	C2 domain-containing protein	C.G.	S.X.	Please select
0.01	5e+0	32	Vitis vinifera	1621203_at	CF515455	-	-	1e+0	At5g07600	oleosin / glycine-rich protein	C.G.	S.X.	Please select
0.01	3e-2	40	Zea mays	Zm.5838.1.A1_at	CF638063	tubulin-specific chaperone A	-	4e-13	At2g30410	KIS (KIESEL)	C.G.	S.X.	Please select

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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC	GO ID	Process Name

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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID	Link to Kappa-View	Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID	Link to KEGG PATHWAY	Pathway Name

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