Gene omics information

Query gene ID	PsAffx.C123000031_at
Gene name
Organism	Glycine max

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF	%ile	Gene/Probe ID	Repr.ID	Gene Name	Functional Description	Ev	AGI code	Arabidopsis gene name	S.X.	H.G.	Other DB
0.79	90.8	PsAffx.C123000031_at	PsAffx.C123000031	-	-	2e+0	At4g22930	PYR4 (PYRIMIDIN 4)	S.X.	H.G.	Please select
0.70	87.1	HgAffx.9055.1.S1_at	CB379446	-	-	2e+0	At5g49015	Expressed protein	S.X.	H.G.	Please select
0.69	86.8	PsAffx.psMA010xD09f_at	PsAffx.psMA010xD09f	-	-	1e+0	At1g07985	Expressed protein	S.X.	H.G.	Please select
0.63	82.9	PsAffx.psHB004xH08f_at	PsAffx.psHB004xH08f	-	-	5e+0	At3g61840	unknown protein	S.X.	H.G.	Please select
0.62	82.1	GmaAffx.14280.1.S1_at	BM095066	-	-	1e-8	At1g22710	SUC2 (SUCROSE-PROTON SYMPORTER 2)	S.X.	H.G.	Please select
0.61	81.8	HgAffx.3203.1.A1_at	CK350831	-	-	3e+0	At5g23760	heavy-metal-associated domain-containing protein	S.X.	H.G.	Please select
0.61	81.8	PsAffx.CL1693Contig1_at	PsAffx.CL1693Contig1	-	-	6e+0	At5g20190	binding	S.X.	H.G.	Please select
0.53	74.2	GmaAffx.14602.1.S1_at	BM731566	-	-	2e-1	At3g45851	unknown protein	S.X.	H.G.	Please select
0.47	66.6	PsAffx.C1000091_at	PsAffx.C1000091	-	-	4e-1	At2g21490	LEA (DEHYDRIN LEA)	S.X.	H.G.	Please select
0.47	66.6	HgAffx.14720.1.A1_at	CK350926	-	-	2e-1	At1g66360	C2 domain-containing protein	S.X.	H.G.	Please select

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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.

Std2 GX	%ile	GSM ID	Assay Name	GSE ID	Experiment Title
41.4	99.9	GSM292923	95_1465.1L.R283L, Experimental replicate 1	GSE11611	Combined gene expression and QTL analysis of soybean quantitative resistance to Phytophthora sojae
10.6	99.3	GSM244810	18_SLO.I1W1.CEL, Experimental replicate 1	GSE9687	Expression patterns in time and space during P.sojae infection of soybean cultivars differing in quantitative resistance
9.8	99.3	GSM293641	68_2065.2B.R129U, Experimental replicate 2	GSE11611	Combined gene expression and QTL analysis of soybean quantitative resistance to Phytophthora sojae
8.9	99.2	GSM308560	Mature Soybean (Glycine max) pollen grains Replicate 3	GSE12286	Genomic Expression Profiling of Mature Soybean (Glycine max) Pollen
8.9	99.2	GSM294268	23_2428.2I.R297P, Experimental replicate 2	GSE11611	Combined gene expression and QTL analysis of soybean quantitative resistance to Phytophthora sojae
7.8	99.0	GSM293077	77_1077.1N.R046L, Experimental replicate 1	GSE11611	Combined gene expression and QTL analysis of soybean quantitative resistance to Phytophthora sojae
7.6	98.9	GSM292838	18_C211.1L.SLL3L, Experimental replicate 1	GSE11611	Combined gene expression and QTL analysis of soybean quantitative resistance to Phytophthora sojae
7.4	98.9	GSM244813	18_VP9.I5U4.CEL, Experimental replicate 4	GSE9687	Expression patterns in time and space during P.sojae infection of soybean cultivars differing in quantitative resistance
6.3	98.6	GSM294426	81_3163.2J.SLJ1U, Experimental replicate 2	GSE11611	Combined gene expression and QTL analysis of soybean quantitative resistance to Phytophthora sojae
5.4	98.2	GSM292897	71_1469.1L.R285L, Experimental replicate 1	GSE11611	Combined gene expression and QTL analysis of soybean quantitative resistance to Phytophthora sojae

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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF	Ev	BS	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.25	3e-40	167	PsAffx.C15000122_at	PsAffx.C15000122	-	-	2e+0	At1g20350	ATTIM17-1	C.G.	S.X.	Please select
0.28	4e-21	103	PsAffx.C18000008_at	PsAffx.C18000008	-	-	5e+0	At3g47690	ATEB1A	C.G.	S.X.	Please select
0.02	3e-6	54	PsAffx.C23000097_at	PsAffx.C23000097	-	-	8e-1	At5g24313	unknown protein	C.G.	S.X.	Please select
0.02	2e-4	48	PsAffx.C23000027_at	PsAffx.C23000027	-	-	5e+0	At5g05440	unknown protein	C.G.	S.X.	Please select
0.01	1e-2	42	PsAffx.C3000135_at	PsAffx.C3000135	-	-	2e-2	At2g24330	unknown protein	C.G.	S.X.	Please select
0.01	5e-2	40	PsAffx.C89000052_at	PsAffx.C89000052	-	-	3e-1	At2g45690	SSE1 (SHRUNKEN SEED 1)	C.G.	S.X.	Please select
0.04	5e-2	40	PsAffx.C68000063_at	PsAffx.C68000063	-	-	3e+0	At5g19290	esterase/lipase/thioesterase family protein	C.G.	S.X.	Please select
0.02	5e-2	40	PsAffx.C23000119_at	PsAffx.C23000119	-	-	2e+0	At2g41910	protein kinase family protein	C.G.	S.X.	Please select
0.01	2e-1	38	PsAffx.C82000015_at	PsAffx.C82000015	-	-	1e+0	At3g02790	zinc finger (C2H2 type) family protein	C.G.	S.X.	Please select

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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF	Ev	BS	Species	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.01	2e+0	34	Arabidopsis thaliana	At4g22930	828392	PYR4 (PYRIMIDIN 4)	Encodes dihydroorotase (PYR4).	-	-	-	C.G.	S.X.	Please selectath TAIR (integral)ath,osa KEGG (integral)ath PlantTribes (integral)ath,osa Gramene (integral)ath MPSS (genome)ath InParanoid (ortholog)ath Plant RBP (ortholog)ath SIGnAL (T-DNA)ath RAFL (full-length clone)ath AtGDB (genome)ath Genevestigator (expression)ath,ptr eFP Browser (expression)ath AVT (expression)ath ATTED-II (co-expression)ath AtcisDB (cis-element)ath SUBA (hydropathy)ath AtProteomeath Plant Proteome Databaseath PMN (pathway)ath,osa KaPPA-View 4 (pathway)ath RnR (over-expression)ath iHOP (report)
0.02	4e+0	32	Hordeum vulgare	HM12O22r_s_at	HM12O22r	-	-	7e+0	At5g26912	unknown protein	C.G.	S.X.	Please select
0.03	3e-1	38	Oryza sativa	Os06g0646600	CB659494	-	KNOX family class 2 homeodomain protein	3e-14	At4g32040	KNAT5 (KNOTTED1-LIKE HOMEOBOX GENE 5)	C.G.	S.X.	Please selectath,osa KEGG (integral)ath,osa Gramene (integral)ath,osa KaPPA-View 4 (pathway)
0.02	3e+0	34	Populus trichocarpa	PtpAffx.219384.1.S1_at	pmrna35297	hypothetical protein	-	5e+0	At4g05050	UBQ11 (UBIQUITIN 11)	C.G.	S.X.	Please selectath,ptr eFP Browser (expression)
0.02	6e-1	36	Triticum aestivum	TaAffx.112051.1.S1_x_at	CA627432	-	-	6e-2	At5g24510	60s acidic ribosomal protein P1, putative	C.G.	S.X.	Please select
0.02	7e-1	34	Vitis vinifera	1607308_at	BQ793309	hypothetical protein LOC100263281	-	3e-13	At2g44970	lipase-related	C.G.	S.X.	Please select
0.02	4e+0	32	Zea mays	ZmAffx.629.1.A1_at	AI715057	-	-	8e-1	At3g13437	unknown protein	C.G.	S.X.	Please select

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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC	GO ID	Process Name

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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID	Link to Kappa-View	Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID	Link to KEGG PATHWAY	Pathway Name

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