CoP: Co-expressed Biological Processes

Gene omics information

Query gene ID PsAffx.C115000050_s_at

Gene name

Organism Glycine max

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF %ile Gene/Probe ID Repr.ID Gene Name Functional Description Ev AGI code Arabidopsis gene name S.X. H.G. Other DB
0.91 98.6 PsAffx.C115000050_s_at PsAffx.C115000050 - - 2e+0 At5g66490 unknown protein S.X. H.G.
0.83 92.5 HgAffx.5776.1.S1_at CB826435 - - 1e+0 At5g59030 COPT1 (copper transporter 1) S.X. H.G.
0.77 90.3 HgAffx.11003.1.S1_at CB824101 - - 4e+0 At3g28630 - S.X. H.G.
0.71 87.8 PsAffx.C154000024_at PsAffx.C154000024 - - 2e-1 At5g62160 AtZIP12 (ZINC TRANSPORTER 12 PRECURSOR) S.X. H.G.
0.71 87.8 HgAffx.24315.1.S1_at CB374815 - - 9e-1 At4g15930 microtubule motor S.X. H.G.
0.67 86.1 PsAffx.C6000193_at PsAffx.C6000193 - - 1e+1 Atmg00450 - S.X. H.G.
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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX %ile GSM ID Assay Name GSE ID Experiment Title
1358.0 100.0 GSM292923 95_1465.1L.R283L, Experimental replicate 1 GSE11611 Combined gene expression and QTL analysis of soybean quantitative resistance to Phytophthora sojae
71.8 100.0 GSM292838 18_C211.1L.SLL3L, Experimental replicate 1 GSE11611 Combined gene expression and QTL analysis of soybean quantitative resistance to Phytophthora sojae
65.7 100.0 GSM182035 Laser capture microdissected (LCM) endosperm at the heart stage, biological replicate 1 GSE7511 Expression data from soybean seed compartments with embryos at the heart stage
51.3 99.9 GSM294268 23_2428.2I.R297P, Experimental replicate 2 GSE11611 Combined gene expression and QTL analysis of soybean quantitative resistance to Phytophthora sojae
45.3 99.9 GSM182037 Laser capture microdissected (LCM) endothelium at the heart stage, biological replicate 1 GSE7511 Expression data from soybean seed compartments with embryos at the heart stage
42.9 99.9 GSM293215 95_C050.1O.SLO3P, Experimental replicate 1 GSE11611 Combined gene expression and QTL analysis of soybean quantitative resistance to Phytophthora sojae
38.4 99.9 GSM209589 resistant_48hours_rep2 GSE8432 Expression survey of Rpp1 soybean line PI200492 resistant to P. pachyrhizi
37.8 99.9 GSM238060 Soybean-S03W4-4-RMA GSE9374 Exploration of microarrays as tools to assess substantial equivalence of genetically modified soybeans
26.8 99.8 GSM292836 16_1473.1L.R287U, Experimental replicate 1 GSE11611 Combined gene expression and QTL analysis of soybean quantitative resistance to Phytophthora sojae
24.1 99.8 GSM171675 28_W.I.M.5, Experimental replicate W GSE7124 Plant and pathogen gene expression during infection by P.sojae of 8 soybean cultivars varying in quantitative resistance
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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF Ev BS Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
1.00 0 2411 PsAffx.C115000050_at PsAffx.C115000050 - - 2e+0 At5g66490 unknown protein C.G. S.X.
0.17 0 1017 PsAffx.C53000028_at PsAffx.C53000028 - - 2e-1 At5g17840 chaperone protein dnaJ-related C.G. S.X.
0.41 0 813 PsAffx.C115000051_at PsAffx.C115000051 - - 2e+0 At5g66490 unknown protein C.G. S.X.
0.07 1e-27 125 PsAffx.C76000021_at PsAffx.C76000021 - - 2e+1 At5g46860 VAM3 C.G. S.X.
0.06 7e-23 109 PsAffx.C13000025_at PsAffx.C13000025 - - 5e+0 At4g33770 inositol 1,3,4-trisphosphate 5/6-kinase family protein C.G. S.X.
0.02 4e-12 73 PsAffx.C13000024_at PsAffx.C13000024 - - 8e-2 At2g35820 unknown protein C.G. S.X.
0.04 4e-12 73 PsAffx.C123000007_at PsAffx.C123000007 - - 4e+0 At5g59470 PQ-loop repeat family protein / transmembrane family protein C.G. S.X.
0.01 3e-3 44 PsAffx.C166000015_at PsAffx.C166000015 - - 1e-3 At5g62390 ATBAG7 (ARABIDOPSIS THALIANA BCL-2-ASSOCIATED ATHANOGENE 7) C.G. S.X.
0.01 1e-2 42 PsAffx.C93000003_at PsAffx.C93000003 - - 4e-1 At1g19600 pfkB-type carbohydrate kinase family protein C.G. S.X.
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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF Ev BS Species Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.03 2e+0 34 Arabidopsis thaliana At5g66490 836781 unknown protein F:molecular_function unknown;P:biological_process unknown;C:plasma membrane;P - - - C.G. S.X.
0.02 3e-1 36 Hordeum vulgare Contig8798_at Contig8798 - - 3e-5 At1g27530 - C.G. S.X.
0.03 3e-1 38 Oryza sativa OsAffx.28941.1.S1_x_at - - - 0 C.G. S.X.
0.03 8e-1 36 Populus trichocarpa PtpAffx.219678.1.S1_at pmrna35648 hypothetical protein - 2e+0 At3g43740 leucine-rich repeat family protein C.G. S.X.
0.02 6e-1 36 Triticum aestivum TaAffx.4396.1.S1_at CA742873 - - 2e+0 At5g64667 IDL2 (INFLORESCENCE DEFICIENT IN ABSCISSION (IDA)-LIKE 2) C.G. S.X.
0.02 2e-1 36 Vitis vinifera 1619271_at CB981487 hypothetical protein LOC100247619 - 1e+0 At5g56100 glycine-rich protein / oleosin C.G. S.X.
0.02 3e-1 36 Zea mays Zm.1789.1.A1_at BG840766 - - 4e-1 At4g01895 systemic acquired resistance (SAR) regulator protein NIMIN-1-related C.G. S.X.
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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC GO ID Process Name
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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID Link to Kappa-View Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID Link to KEGG PATHWAY Pathway Name
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