Gene omics information

Query gene ID	PsAffx.C104000039_s_at
Gene name
Organism	Glycine max

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF	%ile	Gene/Probe ID	Repr.ID	Gene Name	Functional Description	Ev	AGI code	Arabidopsis gene name	S.X.	H.G.	Other DB
0.91	98.6	PsAffx.C104000039_s_at	PsAffx.C104000039	-	-	4e-1	At5g28490	LSH1 (LIGHT-DEPENDENT SHORT HYPOCOTYLS 1)	S.X.	H.G.	Please select
0.07	10.2	GmaAffx.99.2.A1_s_at	BE330213	Translationally controlled tumor-like protein	-	3e-1	At3g26670	-	S.X.	H.G.	Please select
0.06	9.0	Gma.11119.4.S1_x_at	BE555322	-	-	1e-94	At5g53300	UBC10 (ubiquitin-conjugating enzyme 10)	S.X.	H.G.	Please select
0.01	3.4	Gma.8354.1.S1_at	BE658968	-	-	4e-22	At3g03070	NADH-ubiquinone oxidoreductase-related	S.X.	H.G.	Please select
0.01	3.4	Gma.1305.1.S1_at	CD411822	-	-	9e-2	At5g39950	ATTRX2 (THIOREDOXIN 2)	S.X.	H.G.	Please select
0.01	3.4	GmaAffx.34569.1.S1_s_at	AW306183	-	-	1e+1	Atcg00130	-	S.X.	H.G.	Please select

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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.

Std2 GX	%ile	GSM ID	Assay Name	GSE ID	Experiment Title
63.5	99.9	GSM292886	61_1483.1L.R292U, Experimental replicate 1	GSE11611	Combined gene expression and QTL analysis of soybean quantitative resistance to Phytophthora sojae
57.1	99.9	GSM147953	Laser capture microdissected (LCM) inner integument at the globular stage, biological replicate 3	GSE6414	Expression data from soybean seed compartments with embryos at the globular stage
50.3	99.9	GSM182035	Laser capture microdissected (LCM) endosperm at the heart stage, biological replicate 1	GSE7511	Expression data from soybean seed compartments with embryos at the heart stage
28.9	99.8	GSM244828	21_V71.I5L3.CEL, Experimental replicate 3	GSE9687	Expression patterns in time and space during P.sojae infection of soybean cultivars differing in quantitative resistance
27.3	99.8	GSM292178	34-1006.1A.R003P, Experimental replicate 1	GSE11611	Combined gene expression and QTL analysis of soybean quantitative resistance to Phytophthora sojae
24.6	99.8	GSM293107	22_1135.1O.R085U, Experimental replicate 1	GSE11611	Combined gene expression and QTL analysis of soybean quantitative resistance to Phytophthora sojae
24.1	99.8	GSM293653	79_2062.2B.R280P, Experimental replicate 2	GSE11611	Combined gene expression and QTL analysis of soybean quantitative resistance to Phytophthora sojae
19.9	99.7	GSM147938	Laser capture microdissected (LCM) suspensor at the globular stage, biological replicate 3	GSE6414	Expression data from soybean seed compartments with embryos at the globular stage
19.8	99.7	GSM292222	16_C029.1B.R9B2U, Experimental replicate 1	GSE11611	Combined gene expression and QTL analysis of soybean quantitative resistance to Phytophthora sojae
19.4	99.7	GSM171619	15_W.F.M.5, Experimental replicate W	GSE7124	Plant and pathogen gene expression during infection by P.sojae of 8 soybean cultivars varying in quantitative resistance

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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF	Ev	BS	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.32	0	1731	PsAffx.C104000040_at	PsAffx.C104000040	-	-	2e+0	At4g32760	protein transporter	C.G.	S.X.	Please select
0.23	0	932	PsAffx.C195000008_s_at	PsAffx.C195000008	-	-	7e-1	At3g25200	unknown protein	C.G.	S.X.	Please select
0.23	0	932	PsAffx.C195000008_at	PsAffx.C195000008	-	-	7e-1	At3g25200	unknown protein	C.G.	S.X.	Please select
0.28	0	839	PsAffx.C115000035_at	PsAffx.C115000035	-	-	7e-1	At5g09820	plastid-lipid associated protein PAP / fibrillin family protein	C.G.	S.X.	Please select
0.28	0	823	PsAffx.C41000081_at	PsAffx.C41000081	-	-	1e-1	At3g05760	nucleic acid binding / zinc ion binding	C.G.	S.X.	Please select
0.34	0	815	PsAffx.C506000002_at	PsAffx.C506000002	-	-	2e+1	At5g16286	unknown protein	C.G.	S.X.	Please select
0.35	0	799	PsAffx.C39000074_at	PsAffx.C39000074	-	-	2e+1	At5g16286	unknown protein	C.G.	S.X.	Please select
0.26	0	799	PsAffx.C187000010_at	PsAffx.C187000010	-	-	8e-1	At4g04404	zinc finger (C2H2 type) family protein	C.G.	S.X.	Please select
0.31	0	781	PsAffx.C57000083_at	PsAffx.C57000083	-	-	6e-1	At4g14380	unknown protein	C.G.	S.X.	Please select

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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF	Ev	BS	Species	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.01	4e-1	38	Arabidopsis thaliana	At5g28490	832941	LSH1 (LIGHT-DEPENDENT SHORT HYPOCOTYLS 1)	Encodes a nuclear protein that mediates light regulation of seedling development in a phytochrome-dependent manner.	-	-	-	C.G.	S.X.	Please selectath TAIR (integral)ath,osa KEGG (integral)ath PlantTribes (integral)ath,osa Gramene (integral)ath MPSS (genome)ath InParanoid (ortholog)ath Plant RBP (ortholog)ath SIGnAL (T-DNA)ath RAFL (full-length clone)ath AtGDB (genome)ath Genevestigator (expression)ath,ptr eFP Browser (expression)ath AVT (expression)ath ATTED-II (co-expression)ath AtcisDB (cis-element)ath SUBA (hydropathy)ath AtProteomeath Plant Proteome Databaseath PMN (pathway)ath,osa KaPPA-View 4 (pathway)ath RnR (over-expression)ath iHOP (report)
0.01	5e-2	40	Hordeum vulgare	Contig7760_s_at	Contig7760	-	-	7e-1	At3g30350	unknown protein	C.G.	S.X.	Please select
0.01	6e-2	42	Oryza sativa	Os03g0142600	9631.m00405	-	Myb, DNA-binding domain containing protein	2e-5	At3g01530	AtMYB57 (myb domain protein 57)	C.G.	S.X.	Please selectath,osa KEGG (integral)ath,osa Gramene (integral)ath,osa KaPPA-View 4 (pathway)
0.01	6e-1	38	Populus trichocarpa	PtpAffx.144078.1.S1_at	CK107271	hypothetical protein	-	2e-21	At4g37130	hydroxyproline-rich glycoprotein family protein	C.G.	S.X.	Please selectath,ptr eFP Browser (expression)
0.01	1e-4	50	Triticum aestivum	TaAffx.29103.1.S1_at	CA650212	-	-	1e+0	At4g30620	unknown protein	C.G.	S.X.	Please select
0.01	5e-1	36	Vitis vinifera	1609138_at	CF519079	hypothetical protein LOC100241044	-	2e+0	At5g06265	hyaluronan mediated motility receptor-related	C.G.	S.X.	Please select
0.01	2e-1	38	Zea mays	Zm.6018.1.A1_at	CF624646	GRF-interacting factor 3-like	-	3e-24	At4g00850	GIF3 (GRF1-INTERACTING FACTOR 3)	C.G.	S.X.	Please select

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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC	GO ID	Process Name

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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID	Link to Kappa-View	Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID	Link to KEGG PATHWAY	Pathway Name

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