CoP: Co-expressed Biological Processes

Gene omics information

Query gene ID PsAffx.C104000022_at

Gene name

Organism Glycine max

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF %ile Gene/Probe ID Repr.ID Gene Name Functional Description Ev AGI code Arabidopsis gene name S.X. H.G. Other DB
0.91 98.6 PsAffx.C104000022_at PsAffx.C104000022 - - 6e+0 At3g12545 lipid transfer protein-related S.X. H.G.
0.67 86.1 PsAffx.C18000104_at PsAffx.C18000104 - - 2e+0 At5g15430 calmodulin-binding protein-related S.X. H.G.
0.50 71.7 PsAffx.C49000057_at PsAffx.C49000057 - - 3e-1 At5g41761 unknown protein S.X. H.G.
0.50 71.7 PsAffx.C86000041_at PsAffx.C86000041 - - 2e-1 At1g31330 PSAF (photosystem I subunit F) S.X. H.G.
0.50 71.7 PsAffx.psZG005xN22f_s_at PsAffx.psZG005xN22f - - 9e+0 At5g14602 unknown protein S.X. H.G.
0.10 13.0 GmaAffx.89500.1.A1_at CK605776 - - 1e+1 At5g48860 unknown protein S.X. H.G.
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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX %ile GSM ID Assay Name GSE ID Experiment Title
149.8 100.0 GSM294268 23_2428.2I.R297P, Experimental replicate 2 GSE11611 Combined gene expression and QTL analysis of soybean quantitative resistance to Phytophthora sojae
101.6 100.0 GSM293584 16_2089.2B.R181U, Experimental replicate 2 GSE11611 Combined gene expression and QTL analysis of soybean quantitative resistance to Phytophthora sojae
92.1 100.0 GSM293195 77_1130.1O.R082P, Experimental replicate 1 GSE11611 Combined gene expression and QTL analysis of soybean quantitative resistance to Phytophthora sojae
82.6 100.0 GSM292886 61_1483.1L.R292U, Experimental replicate 1 GSE11611 Combined gene expression and QTL analysis of soybean quantitative resistance to Phytophthora sojae
60.0 99.9 GSM244883 34_CON.M5W2.CEL, Experimental replicate 2 GSE9687 Expression patterns in time and space during P.sojae infection of soybean cultivars differing in quantitative resistance
59.8 99.9 GSM244916 4_SLO.I3U1.CEL, Experimental replicate 1 GSE9687 Expression patterns in time and space during P.sojae infection of soybean cultivars differing in quantitative resistance
59.6 99.9 GSM147939 Laser capture microdissected (LCM) endosperm at the globular stage, biological replicate 1 GSE6414 Expression data from soybean seed compartments with embryos at the globular stage
52.7 99.9 GSM293113 28_C047.1O.R9O2L, Experimental replicate 1 GSE11611 Combined gene expression and QTL analysis of soybean quantitative resistance to Phytophthora sojae
46.1 99.9 GSM244813 18_VP9.I5U4.CEL, Experimental replicate 4 GSE9687 Expression patterns in time and space during P.sojae infection of soybean cultivars differing in quantitative resistance
39.6 99.9 GSM244936 9_V71.I5U2.CEL, Experimental replicate 2 GSE9687 Expression patterns in time and space during P.sojae infection of soybean cultivars differing in quantitative resistance
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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF Ev BS Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.55 2e-53 210 PsAffx.C5000143_at PsAffx.C5000143 - - 8e+0 At5g28750 thylakoid assembly protein, putative C.G. S.X.
0.06 4e-8 59 PsAffx.C199000003_at PsAffx.C199000003 - - 4e-1 At1g60360 zinc finger (C3HC4-type RING finger) family protein C.G. S.X.
0.02 6e-1 36 PsAffx.CL1802Contig1_at PsAffx.CL1802Contig1 - - 8e+0 At5g61270 PIF7 (PHYTOCHROME-INTERACTING FACTOR7) C.G. S.X.
0.01 6e-1 36 PsAffx.C71000035_at PsAffx.C71000035 - - 1e-2 At3g49470 NACA2 (NASCENT POLYPEPTIDE-ASSOCIATED COMPLEX SUBUNIT ALPHA-LIKE PROTEIN 2) C.G. S.X.
0.01 6e-1 36 PsAffx.C645000001_at PsAffx.C645000001 - - 4e-1 At5g61590 AP2 domain-containing transcription factor family protein C.G. S.X.
0.01 6e-1 36 PsAffx.C115000012_at PsAffx.C115000012 - - 7e-2 At5g06020 self-incompatibility protein-related C.G. S.X.
0.02 6e-1 36 PsAffx.C11000117_at PsAffx.C11000117 - - 1e+0 At4g33460 ATNAP13 C.G. S.X.
0.01 2e+0 34 PsAffx.C9000046_s_at PsAffx.C9000046 - - 3e-1 At1g50590 pirin, putative C.G. S.X.
0.01 2e+0 34 PsAffx.C5000005_at PsAffx.C5000005 - - 6e-1 At1g71190 SAG18 (SENESCENCE ASSOCIATED GENE 18) C.G. S.X.
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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF Ev BS Species Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.03 6e+0 32 Arabidopsis thaliana At3g12545 820434 lipid transfer protein-related F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;P - - - C.G. S.X.
0.03 3e+0 32 Hordeum vulgare HVSMEm0003O11r2_at HVSMEm0003O11r2 - - 8e+0 At2g01554 unknown protein C.G. S.X.
0.03 8e-1 36 Oryza sativa Os12g0153900 9640.m00496 - Hypothetical protein 6e-3 At2g35960 NHL12 C.G. S.X.
0.03 2e+0 34 Populus trichocarpa PtpAffx.203039.1.S1_at pmrna6018 hypothetical protein - 7e-1 At2g40710 - C.G. S.X.
0.03 4e-1 36 Triticum aestivum TaAffx.106245.1.S1_at CA721460 - - 7e-2 At3g09085 unknown protein C.G. S.X.
0.02 2e+0 32 Vitis vinifera 1616200_at CF568887 - - 4e-28 At3g09200 60S acidic ribosomal protein P0 (RPP0B) C.G. S.X.
0.04 3e+0 32 Zea mays Zm.9294.1.A1_at BM335301 - - 2e+0 At2g43120 pirin, putative C.G. S.X.
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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC GO ID Process Name
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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID Link to Kappa-View Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID Link to KEGG PATHWAY Pathway Name
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